RnoINT0010327 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98497931-98502899:-
Coord C1 exon
chr10:98502792-98502899
Coord A exon
chr10:98498105-98502791
Coord C2 exon
chr10:98497931-98498104
Length
4687 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CATCCATATTCTCTCATCAGAAG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GGCATCGTGGTGGTCTGGTTTGGGATACTGGAAGCTTCCCTGTCCATTCTGTTTATTGTGTGCAGTGTTTCTCCACATATCGCCATGAGTAGCATCAGTGATTTTAAA
Seq A exon
GTAAGAAGTGTGGGTAGGGGATGCTAATAATTTCAATCATTGTATTTTTTTAAAAAAAAAGCTTTTTATTCGTTCTTTCTGAATTTCACATCACGTACCCCAATCCCACACATCGTCTCCTTACCCTCAACCTTGCCACCTCCTGACAGAGGGGGAAAAAATCTCACTGTAGAAGCTGCAGTGTGTCACAGTGTGTCCCATAGTACTCCCTTTTGTCCACACTTCTTTGCTTGTGAATGTTGGTTGCAATGAATCATCAGTCTGGCCTCTGCTACTCTATCAACCCCAGAACCTCACTGGCACTCCTGTTGTGCCCTGTGTCATGGAGATCCTGTAGTTTTGGGTCTGTAGAACTCCAGTAGTTCATCAAAGGGGTGGGTGTTGGGGTGGGCCAGTTCAAAGCCTGAATCTGGGCCTGGCAGGTATCGGAGATGGCCAACCCTCTGGCTCTCACACTCTCACCAGCACCACCCCCCATTCCCACCTCAGCCCCCGACTCCTACCTCCCCCACCCCCACAACCAGGGCTACCTCTATTCTGCTGCCCAGGTAAGGCCCAGGGCTTTCCTGAGCTTTGCAGCTGGTGAGGGACATGGCCAGTTCTCCCACTCTCATAACCACAGGGCCAGCTCTCCCTTCTGCCATAGACGGTGAGGGATGCGGGAAGAGAGGAGGCTATCTCTCATCTATATACCACTGCCCAGAAGACAAGTGTCATGGACAGCTCTTGGGCTGACTCATCTGCAATTCCTACCCCCAGAGCCAGGTCTACTGTGCTGCCCAGGCAAGCTGCAGGGCCAGCTCTCCTGTTCGTATGACCCCAGGGCGTTCTCCCACCTGGCACAGTGGTAAAGGAGGAGGAAGGAGAAGGATATCTCTCCCTCATCCATGACACAGCAGGGAGACACAGTGAGAGGGACAGCTCTCCCACTCTTCTCCTTGAGACTGGCTCATTCACAGCTCAGTATTTGTATTTTTAATCATATACGTGCAAAATATTTTTTCTTTGGGGCATGGGGATGCACTGAAACATGGCCTAATTTAGTATAATGTAGTTTGGAATTATTGCCAGCAACTTAGAAAGCTTATTTTTGGAAACCCCCACACCTGACCTCACGTAATGAGAACTAGAAAATATTTAGAGGTCTTTTCATTATCCATGGATTAACATGGCATTGCACATCGGTGTACCAAGCAAAATGTGGTTAGGGAATTTGATTTGTGGGTCTCAGGTTCTTAAACACAATGTAATTATTTTCAATAGTTATACATTATTAATTTACCTTAAAAATTCTTGTAGTTTCAACCACCCCCACACATGCACACATGTGCAATGCTTATATAAGCCAGGCAATGTTAGCCATACATTTTTAAGACAAGCAAATAAAGTGAATTTATATCTCCATTATGACAAGGTCCACCAGTCCAGCACTTTTTACACATGAAGAAGTCAGTCAGAAATCTCTTTGCATGTGATTTAAGTTAAATGTTGATACACATTTTTTTTAAAATGTCATATGTATCAAAGAGTAGATTAACATCCCATGGGCTTTGCATACATTGACTGCCCTCACGTCCAGTTTCACAGTAGCACGTGCTTGGGAACATAATTGAATATCTCATAAAATCAATCGCAGGGATCGGGGATTATTGAGAGCATTAGGTTCGATGCTAACAAGCACACACCAGTGATTCCACCAGGAGAGGGGTCTGTCCTAAAGCAAGGATGCTGGTGCATACAAGAGGTGAATGAAGTAAGTGCTGTGAGACAGCTTGTCCCCTGAAGGTGTGGGATCACGGGATTAGCAAAAGAGATTGGTAGCTTTTATAGTGTTGGTAGCATTTTTATTGGTGTTGTGGTTTTCCTTCTAAGCCAGCTGGCTCCCAAATAGTTGAGACTGGATTCTTATACTTATTTAACAAGCTTTAAGGGCACAACAACTGAGCACTATTATTGTACTTTAATCCTCTAAGCCAATCTGGCTACTTCCCAGTTAAAATCCTAGTGATACCTGCATTTTAATACTGATCTGGCTCTCTGGTCTCCAGGTGTTTTCTCATGGTCTCACCTGGACCCTCCTTATGGTGAATCCCTATTTCTTGCTCTTCTTCCCCTTCCTCTGGCTGGGAGGAAGTCCATCCCTATTGTCTTCCCTGATCAGTCATTGGCTGATCAGCTCCTTTATTGACCAACCAGAGAATAGTTAGGGAGCAATGTTTACACAACACTGAGACAGGAGAATCTCAGGATAAAGATTGCAAACAGACACAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAAACCAGCATTTGAGTAATCAGGGTGTCTTTACACAGTACACAATAACATGCCTACATTATACAAACATTTATGTTCCTCCTGTGACCCCTCTGTCTCCCCACGGCTGTTGGACAACAACCTGAGGGGACAAAGGGAGCAGAGGTGGAGAGCAGGGTCAGACAGCAGGGAATATGAGTGGAATGACCTCTGGAATCCACTGCAGCGAGACAAGTCTACTTTATTGTTTCAGGGGTAGGGTATATAAGAGCCTTTTATGAGTCTGGGTGGAAAGGGTCTCAGCATACAGGGAGCAAGAAGGACTGATTAGTTATAATGCAGCATCTAATCATCTTGTGGGCAGGAAACCAGAGTGTGTGCTGGGTTGTGCAGCCTTGCGGAGACTCTGTATGAGGTCAGTTTTCAGCCAAGGCCAAGCTACCTGTGTTCAGAGACACTCTCCACACGATGACAGGCAGAGACGGGAAAGCCCACTGAGAAAGGGGGTCTCCATTTTGTGCCAAGTTCAGAAAGCCAGTCATGAGGCACTGCTACTTTAACAGGAGAGTTCCCCAACATCCTTTTGGTGACCAGACTAGTAAAACAATAATCTCCAAAGAATTAAACTTTTCCTAGAAACCATTTTAGGAGGAGGAAAAGGCTGAAGCTTGATGCCAGACAGAAAAGGATCTTGTCCCCCACAGAGAGGTTTCACACAGTTCTTACAACTTTAGCAGACCACCTTGCTGGAGAGACGGAGCCGAGAGTGGGATGGGTCCACAATGGCCCACACCTTCACTGTGCCTGCTTAGTTGTGCATGCCACTCTGGGAACCCAAACCTCATGTCAGCATCCCTGATTAGACCCTTTCATCTGTTTCTTGTCTTCCCGATGTGACTGCTTGGACCAATCGCTTTTCTCTGCCTTTTGGTAATCTTTGTCCCTTTGAGTGACACGTTAGGGTGGACTGTGAGCCCTGGCTTACTGGGGGCAGCCAGAGCCCAGCCTGTGACCCCAAAAACAAATGTCCAAAACCAACAACTCAACTTGACATTTCTGAAGATGAACCCTCACTTCATGATCTCAGACCACAGAACTCCAACACCCACACCATAGTTTGACACACGCCAAGGAAAGAAAAAAGATAAAAAGGCCTGGGGAACTTTCTCTGCTATCACCTCAGGTAATTAAGTGGAGGGGCTGTTTAAGTCGGAATGGGAGATGGTGGTTTCTCAAACAGAATTTGGGGCATTATCTTACCTTAAAGATAGCAAATGCATACTAGAGACCCATGTGTGGTGTGCAGACATTTGACACAATAGGACATGAAATTGATAGGATTTTTCCAAGGATCAAAATTCAAGTACTTCCCAAGATAATGCCTGGGAGTGGAGCTAAGAATAAAATCAATCTCATAGACTTGATATGAGTATTAATTTATATAATATACTTTAAAGAAAGTGTCCCTCTCCAGGTAGGAATAAAGTTTGACAAAACCCTATTATGAGAAGGTCATCATCTACTCTATCCAATTTGATCCCTAGGATGTTGTCATCCTATTTTTCACAGTATTAGGAAAGTAATTCTAAGATCCCTATAGAAGCACAAAAGACTGAACAGTCAAAGCAACCCTGTTGGTTTTTAAAACAAAATCCCAAACGTTCGAATTACCAAATGAAGATGCAGGAGTCAGATGCTGTGGTGGAAGCTTCCCAGCTCAGAGCGGCAGAGACAGCACCCAGCTGACCTTCCTACCCCACCAACACCCAAACAGAAAAGACCTCTTTCTTCTACTCCATACTGTCTTAAATACCCTTCAACTCAAAGCCCCTCCTTCCTCTTTCCTGGGTTTTCTAATGTTCACTCCCTGTCAGCTGGTTGCCTCTCTGACACTTGACCTATCGTTGACTTTATTCAGTCCTGTTCACAGGTAGCTCTTTGAACTAAAGGTGTATGCTAGGGTGAGCCGCACTACAGGACCTGTTTACAGTGAACAGAAAGCTCGTGGATAGAAGGCATGTGCTAGGGCCGAGCCATGCCGCAGCAATATGTTTCATGTTCACAATCCTGGGGTTCACAGATTGCGCACAACCCCTCAGCCGAAAGAACCACACCATGTAGTCCAAGCTGGCATGCGTAAAGCCAAGGGTTCAATCCCCATGCCTGATAAACCAGGCAGAGTGTCCCGTACCTTTAGTCCTAGCATCTGGGAGATGGGAACCAGATCAGAAGTTAAAGGTTATCTTTTATGTATAATGCCAGCCAACCTCTGCTACATAAGAGACTACTACCCCCCCCAAAAAATGAACCCCACAAAACAAAAACCAACCAGACAAAAACACTCTGCAATTTAACTGAACTGATGTACCATCCATATTCTCTCATCAG
Seq C2 exon
AAGAAAGCTGACTCCCAGCTGTGGATTTCTGGCCTCTACCCTTCTGCCTACTGGTGTGGGCAGGCGCTCGTGGACATTACTCTTCTCAGTGGAATTCTTCTCACGGGCTACATCACGTTATACACGACAAAACTGATGCACATCTACTTGACAGGCGAAATCGTGCTGTCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]