GgaINT0130582 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8079732-8081131:-
Coord C1 exon
chr19:8080838-8081131
Coord A exon
chr19:8080513-8080837
Coord C2 exon
chr19:8079732-8080512
Length
325 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCCACCTTGTTTTCTTCCAGGGC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCAAAAATGGCTGCTTTAGCAGCAGCAGAATTAGATGAGAACGATGAAAAGACACCTTTCTCAGCGATGTCAGCCAAATCACCATGCTCTTTGGAAACAGCTTGGCCTCTAAGTGCAATCATTCAGTTCTGGCCTCTTGGCCTCGTCCTGTCTGCTGCACCTGTTACCATAGTGGGACTCCGGAGAGAGCTGTCCCTGCTGGCATGCTTGAAAGTACTTCAGGGGATTGGCTGCTACAAGATGGAAAGCAGCTTCTTAGGCTGTGGCATCACTTCTGTTAGAGCTCTCCCACAG
Seq A exon
GTAACACAGCACAACTAACTGTCACGAGGTCAGGATCCTAGAACAGTACTGGTGTGAAGTCTGCTATCAATCTAGTTTTTCTTTCTTCACTGCTTTAGATATGCAAGGATGATTCTGTCATTAATAGGTCAGAATAGACATGGGGCTCAGATGTGAGACCAAAGCATGAAAGCTCTTGCTAGTCTGTCATAGGAACAAACTAATGAAAGCTTTTAGTCGTACTTATCAGTTGCTTGTATAATAAGGCAGTGCTTTGTCTGAACAGCAAAACTAGATCACAGTCTTGCAAAGCATCAACTGGCCTCTCCACCTTGTTTTCTTCCAG
Seq C2 exon
GGCTCTGTCAGGTTTCACTGCAAGAAGTCTCCCCTGCATTACGCAAATGTCAGTCCCCACACAGCTGCCTATTCTACCACCGGATTCAACCAGATTTTATTGGACAGAAAAGAACTGCTTCCAACATAACTTTTGGCCATCTGTATGTATGGAACTTTTTCCTTCAGGGAAGGACTGTCTGCAGGCTGCTGCTTTTCAAGTTATTCAATGTCCCTATCTGCTGCTACCTCAGTTTCCTATAATCACGCAGTGTACGCATATTATAATTCAAATTTAGAATGCAGGGGAGGCATTCCTCCTCTCAGACACACACACATACTAAAAGAAATAATCAGTACTATGAGAACACTCAATTAAAATAGATCAAATGCTTTAAAGAGTATATACTTGAACAGAACACTTCTAGCAGTACGTGGTCAAAACAAGAGGCTGCTAATGAGATAGCAAAAAAGGCAAACACTTCTGATGAATGCTGGGTTCTTGTTGGGAGGTACAACAAACATTTACTACCCTGTGACCAAGGAAGTAAGTAGCAGTCAACTGTAACACTAAAGGCAGATGTCTCAGGGAAAAGCAAGACCAGACTCTTGCTTTTTATCTACAGGACCAAAATACATTATGATCTGTGCATTTCTGACATCACCTAGCCAACAGCATTACCTCTGCAGAGGGACCAAGGTTCTCATCAGGGCACCCTATACCACCTCTGTATGTAAGTGGTTCTTCAAAATGTTCAGCTTTTCTGTGTATGCCACATCTAAATAAACTCTTAAGTATCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGCATCACTTCTGTT
R:
GTGTCTGAGAGGAGGAATGCC
Band lengths:
345-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]