HsaINT0108456 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36495755-36498559:-
Coord C1 exon
chr17:36498266-36498559
Coord A exon
chr17:36496407-36498265
Coord C2 exon
chr17:36495755-36496406
Length
1859 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATCTCTCTCTCCCCTCTAGGGA
3' ss Score
12.4
Exon sequences
Seq C1 exon
ATCAGAATGGCCTGCCTTGCTGCTAAAGAGCTGGATGGTGTGGAAGAAAAACACTTCTCTCAAGCTCCCTGTTCCCTGAGCACCTCGCCGCTGCAGACCAGGCTCCTGGAGGCAATAATCCGCCTCTGGCCCCTGGGACTGGTCCTGGCCAATACGGCTATGGGTGTAGGCAGCTTTCAGAGGAAATTAGTGGTCTGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTACACTGTCCAGACAGCACAAGACCAGGCTGGTGTCACGTCCATCCGAGCGCTGCCTCAG
Seq A exon
GTACGTTGTGTGTGATGGCCATGACAGCTTTGTTCCTGAGAACAGCAGGAGCAAAGCCTACAAGTTCACAGCGGGAATGAGACTGAGGCTGGGACAAGATCCATCCCTAACCCTACTGGGTAAACCAGAGGGCTGCATGTCCCAATCAGCTGCAGGTTTGGATTATTTATTTTGTTATAACTGGGAATCTTCCAGAGCCCTTTATCTTTTTAAAAACTGCTTCTAATTATTTCAGCATCTCTAAATCTTCTAGTCCCATTTCCAAATGCAATGCTGCGTTTCTAGCAAGCTCCCAGCTGATTCTGATGCTCCATGAACCACACTGTGAGAACCAAGGCTTTAGATGAGTCAGGAGCAGGAGGTGATGAAAGTTTAGCTTAGGGCCTGGAGCGGTGGCTCACGCCTATAATCCCAGTACTTTGGGAAGTCGAGGCGGGTGTATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTGGTTGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCATGAGAATTGCTTGAATCTGGGAGGGAGAGGTTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGTGACAGGACGAGAGTCCATCTAAAAAAAAAAAAAAGTTTGGTTTAGGGTAATAATAGGTCAATTACAGAAAAGAGGAAAAATTCACGAGACATAGCAAAAAAGAAACTACCCAAGACTTGAGAGCAAATAATCTAATTAGTCCCACATCACAACTTGGGTTGTGAGGAGTTTGTTACCTCAAATGGCACTGGATTTGGCACCATGTTTTCCCCAAATTGTATTGCTTGGTTTTTTCCTTTTCTGGCTGACGAAATGACAAGCAGGGTCAGTGGTCCAAGTTCTCTGTGGGTTTTTTTTTTTTTTCATGTTATTTAATTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGATGGAATGCAGTGGGTTTAAGCGATTCTCCTGCCTCAGCCTCCCGAATAGCTGGGACTACAGGGCATGTGCCACCATGCCTGGCTATATTTTTTTTTTTGTATTTTTAATAGAGACGGGGTTTCGCCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGGTCTGCCTGCCTTGCCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCTGTTTTTATATAAGCATCCAGGGAAAAGTCAGCCAGCACACTCAGGAAGTCATTGTCACTCAGGGCTTTGTGAGTCACCCCAGTAAGCCAGGCCTCATAGAATTAAAGTGGCCGAGGAAAGGTGAAAGTATGTTGCACTGGGAGGTAGAACCCCAGGGTCTGGATCCTGGTTCTGCCCCATTCACTGGATGATCTTGGCTAAGACACATTTTCTCGGAGCCTGTCTATAAAATGGGCTAATACTCAACCTACTGCATGGAGTCACAGCAAGGAGTAAGTGAAATGACAAGGCAGAAGGAAACACCAAATTTCCATTCAGAGGAATAACTATAGGCCTTAATCTGGATGAAGTCTCCCATGAAAACACACAGGCCTGCTAAACAGAAGGGTAAATGTTTTGCCCTTCTGGCTTTAAGCAGTCATAGGAATGTGACAGACATTCCTCTTAGGGAGCGCCTCCTCCTAGGGTTTCCTCATCTGTCTCACACTGAGTGGATGTAATGCTATTTTAATCCTGCTGTGGCCCCCAATACTAGTACTTGTCCATACCTTCTTGCATTTTTAGCGTCTGCTCTGTGGGGTTGTTAGGCCCTGGCACTCCCAGGAACTAGTGCTAAAGCTGCATCTCTCTCTCCCCTCTAG
Seq C2 exon
GGATCGATAAAGTTTCACTGCAGAAAGTCTCCACTGCGGTATGCTGACATCTGCCCTGAACCTTCACCCTACAGCATTACAGGCTTTAATCAGATTCTGCTGGAAAGACACAGGCTGATCCACGTGACCTCTTCTGCCTTCACTGGGCTGGGGTGATCCTTGGTGCCTTTGTTTCCACAAGGCCTTTTCCTGCCCCCTGCCTTGCCAAAGACATTTAATCAGCACACAGCTGCCAGACTATTCCCACAGTGCTCCAAATGCACATGAACAACAGTGACGGCTCCAGCCTTCGACCCAGAGCCCCGTGCCCAGTGCGTCAGTGGGCCTGGGGTTCCAGGCTACATCAAGCACTGATGGTGTCAGGGCTGGTAGTTACCAAATCAGGGTTAAGAAACATCAGGGCCACATTTCACTACCTTCACAGATCAAACTCAGCAGCAGTCATGACTGTCTGTCACTACACTGGGGATCCCAATTCCACATAAGCACTTTTGGAAGAAAACAGCCAAAGTTGGCCTAAAATTGGCGCTGGAATTTGGGCTGGGAAAAATCTTGTGGTTATTTCCTTTAAAAAGGAACAAAACTTTAGTATTTAATTAGTTGATTTATTTAATGTAATTTCAAACAATTAAATTATGAATAATGCAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGTAGCTACACTGTCCA
R:
GGAGCCGTCACTGTTGTTCAT
Band lengths:
354-2213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development