HsaINT0108456 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34851599-34854403:-
Coord C1 exon
chr17:34854110-34854403
Coord A exon
chr17:34852251-34854109
Coord C2 exon
chr17:34851599-34852250
Length
1859 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATCTCTCTCTCCCCTCTAGGGA
3' ss Score
12.4
Exon sequences
Seq C1 exon
ATCAGAATGGCCTGCCTTGCTGCTAAAGAGCTGGATGGTGTGGAAGAAAAACACTTCTCTCAAGCTCCCTGTTCCCTGAGCACCTCGCCGCTGCAGACCAGGCTCCTGGAGGCAATAATCCGCCTCTGGCCCCTGGGACTGGTCCTGGCCAATACGGCTATGGGTGTAGGCAGCTTTCAGAGGAAATTAGTGGTCTGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTACACTGTCCAGACAGCACAAGACCAGGCTGGTGTCACGTCCATCCGAGCGCTGCCTCAG
Seq A exon
GTACGTTGTGTGTGATGGCCATGACAGCTTTGTTCCTGAGAACAGCAGGAGCAAAGCCTACAAGTTCACAGCGGGAATGAGACTGAGGCTGGGACAAGATCCATCCCTAACCCTACTGGGTAAACCAGAGGGCTGCATGTCCCCATCAGCTGCAGGTTTGGATTATTTATTTTGTTATAACTGGGAATCTTCCAGAGCCCTTTATCTTTTTAAAAACTGCTTCTAATTATTTCAGCATCTCTAAATCTTCTAGTCCCATTTCCAAATGCAATGCTGCGTTTCTAGCAAGCTCCCAGCTGATTCTGATGCTCCATGAACCACACTGTGAGAACCAAGGCTTTAGATGAGTCAGGAGCAGGAGGTGATGAAAGTTTAGCTTAGGGCCTGGAGCGGTGGCTCACGCCTATAATCCCAGTACTTTGGGAAGTCGAGGCGGGTGTATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTGGTTGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCATGAGAATTGCTTGAATCTGGGAGGGAGAGGTTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGTGACAGGACGAGAGTCCATCTAAAAAAAAAAAAAAGTTTGGTTTAGGGTAATAATAGGTCAATTACAGAAAAGAGGAAAAATTCACGAGACATAGCAAAAAAGAAACTACCCAAGACTTGAGAGCAAATAATCTAATTAGTCCCACATCACAACTTGGGTTGTGAGGAGTTTGTTACCTCAAATGGCACTGGATTTGGCACCATGTTTTCCCCAAATTGTATTGCTTGGTTTTTTCCTTTTCTGGCTGACGAAATGACAAGCAGGGTCAGTGGTCCAAGTTCTCTGTGGGTTTTTTTTTTTTTTCATGTTATTTAATTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGATGGAATGCAGTGGGTTTAAGCGATTCTCCTGCCTCAGCCTCCCGAATAGCTGGGACTACAGGGCATGTGCCACCATGCCTGGCTATATTTTTTTTTTTGTATTTTTAATAGAGACGGGGTTTCGCCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGGTCTGCCTGCCTTGCCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCTGTTTTTATATAAGCATCCAGGGAAAAGTCAGCCAGCACACTCAGGAAGTCATTGTCACTCAGGGCTTTGTGAGTCACCCCAGTAAGCCAGGCCTCATAGAATTAAAGTGGCCGAGGAAAGGTGAAAGTATGTTGCACTGGGAGGTAGAACCCCAGGGTCTGGATCCTGGTTCTGCCCCATTCACTGGATGATCTTGGCTAAGACACATTTTCTCGGAGCCTGTCTATAAAATGGGCTAATACTCAACCTACTGCATGGAGTCACAGCAAGGAGTAAGTGAAATGACAAGGCAGAAGGAAACACCAAATTTCCATTCAGAGGAATAACTATAGGCCTTAATCTGGATGAAGTCTCCCATGAAAACACACAGGCCTGCTAAACAGAAGGGTAAATGTTTTGCCCTTCTGGCTTTAAGCAGTCATAGGAATGTGACAGACATTCCTCTTAGGGAGCGCCTCCTCCTAGGGTTTCCTCATCTGTCTCACACTGAGTGGATGTAATGCTATTTTAATCCTGCTGTGGCCCCCAATACTAGTACTTGTCCATACCTTCTTGCATTTTTAGCGTCTGCTCTGTGGGGTTGTTAGGCCCTGGCACTCCCAGGAACTAGTGCTAAAGCTGCATCTCTCTCTCCCCTCTAG
Seq C2 exon
GGATCGATAAAGTTTCACTGCAGAAAGTCTCCACTGCGGTATGCTGACATCTGCCCTGAACCTTCACCCTACAGCATTACAGGCTTTAATCAGATTCTGCTGGAAAGACACAGGCTGATCCACGTGACCTCTTCTGCCTTCACTGGGCTGGGGTGATCCTTGGTGCCTTTGTTTCCACAAGGCCTTTTCCTGCCCCCTGCCTTGCCAAAGACATTTAATCAGCACACAGCTGCCAGACTATTCCCACAGTGCTCCAAATGCACATGAACAACAGTGACGGCTCCAGCCTTCGACCCAGAGCCCCGTGCCCAGTGCGTCAGTGGGCCTGGGGTTCCAGGCTACATCAAGCACTGATGGTGTCAGGGCTGGTAGTTACCAAATCAGGGTTAAGAAACATCAGGGCCACATTTCACTACCTTCACAGATCAAACTCAGCAGCAGTCATGACTGTCTGTCACTACACTGGGGATCCCAATTCCACATAAGCACTTTTGGAAGAAAACAGCCAAAGTTGGCCTAAAATTGGCGCTGGAATTTGGGCTGGGAAAAATCTTGTGGTTATTTCCTTTAAAAAGGAACAAAACTTTAGTATTTAATTAGTTGATTTATTTAATGTAATTTCAAACAATTAAATTATGAATAATGCAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGTAGCTACACTGTCCA
R:
GGAGCCGTCACTGTTGTTCAT
Band lengths:
354-2213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)