DreINT0014908 @ danRer10
Intron Retention
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3619704-3620756:-
Coord C1 exon
chr5:3620427-3620756
Coord A exon
chr5:3620035-3620426
Coord C2 exon
chr5:3619704-3620034
Length
392 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
AATTCAGTTTGTTTTTCCAGGGC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GCGTGGATGGATGCGCTAGCGGAGGCAGAGCTGGACGATGCAGAGGATTTAGTAGAAGAAGAAGCCGAAGCATCATTGATGCCGAATCTGCTGAAAGAGCGAGGCTCGGTCCAGCTGTGCAGCGTCCCGGAGCCGGTGCCGGTCAGAGGATGGCCTGTCGGTCTGGCCATGGCCTCCGCACCCTCTATCACTGTGTCTCTGACCGCCTCGGGCTTCCAGCGGATCATGTCCATCATGACCTGCATCAACATCCCGTTCAGACACGGCCAGTATAAAGTGAAAACCAACCAGTTTGACCAGGGGGTGGCGTCTATCCGAGCTCAGCCACGG
Seq A exon
GTAAGAGATCTGTCACAAAACACAGTTGTGTGGAATCAACCCAGAGTAAAACACATGATGGCGATTACGACATTTGACTATGATTATTAGAAGGAAAAAATGTCAAACATACTAAAAAAACAGTGTCTATTCGAGCCAATAGTATCTGGATGCAAGCTGAGATTGCATCACTCAGCGATGTAATGTCAGACACAATGCACTTAATAGAGTGAGCGACGTCACTGTGAGGGGTAGGGTTAGGGGTGGGGTTAGATGAGTGCATTAAAAGGCATTGGATGCAGCTCAATGCCTCCTCAACAGCTAATCAAGCTTACTCAAGTTTGTTTAAATTAGCTAAAAAGCTGTTGTTTGAATAGTTTTAGGAGATTCTATAATTCAGTTTGTTTTTCCAG
Seq C2 exon
GGCTCCATTAAGATGCATCTTCAGAGATCTCCACTGCTGTACGCGGACATGCATCCAGCGCACAAGACTGAAGTGGTGACCGGATTCAACCAGATCCTGCTGGAGAGAGACTGACTCGAGCTTTAATGCAAGCAATGCACCTTTGAAAAGCACTACACTACACATTATATAGCTGCCTTATTTATAGTGCAATTCTGTATTAGTTCTGTTGCGTTTACTCGCTCAGGTTTCAGCTTAAAGTGCCTTTTATTTCCGCTGCGTTCAGTCGGAATATACTGTAGAGCGTTTTATTATTATTACTTTAAAATACTGAGCTTCCATTTTATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761:ENSDART00000111453:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCATCAACATCCCGTTC
R:
CGCAGCGGAAATAAAAGGCAC
Band lengths:
353-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]