BtaINT0097870 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13157430-13159568:-
Coord C1 exon
chr19:13159266-13159568
Coord A exon
chr19:13158168-13159265
Coord C2 exon
chr19:13157430-13158167
Length
1098 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AGCTGCGTCTCTCTCCCCAGGGC
3' ss Score
11.63
Exon sequences
Seq C1 exon
ATCAGAATGGCCTTCCTTGCTTCTGAAGAACTGGATGGTGTGGAGGAAAAACACTCACCTCACGCTCCCTGCTCCCCGGGCTCCAGTCCGCTGCCCCCGGCTCAGACCAGGCTCCAGGGCGCAATAACCCGCCTCTGGCCCCTGGGACTGGCCCTGGCCAACGCAGCTGTGGGTGTTCACGGCTTTCAGAGGAAGCTGGTGGTCTTCGCCTGCCTCCAGCTCCCCGTGGGCAGCCCCAGGAGCTGCGCCGTCCAGACAGCCCAAGAACAAGCCGGAGTCCTGTCCATCCGAGCGCTGCCTCAG
Seq A exon
GTGGGCCATGCGATGGGGCTGGCGTCCTGACCGCCCCACTGCAGGGTGGGGGGCGGAGCCCGGGGGGTCGCAGCAGCAGCAGCAGGACTGAGGCTGAGATGAAGGCCTCCGAACCTTGCGCATCCCAGCTGGCAGCAGTCGAGTCGTTCCCATCATTACAATTAGGGTTTTCCAAAGTCCTTTCACTGTTAAAAAGCTGCCTCCAAGTGTTCTAGCATCTCTTCTGAGTCATCTTTAAATTAGTCCTACTTCCAAAAAAATGGGTTGTGGTAACAGCAGCTTTTCCCCTCCAATGGCGCTGGATTTGGCACCATGCTTCCCCCTACTTGGGCTTCCCTGGTGGCTCTGACAGTAAAGAATCCGGCTGCAATACAGGAAACCCAGGCTCGTTCCCTGGGTTGGGATCCCCTAGAGGAGGAAATGGCACCCCACTCCACTATTCATGCCTAGAAATCCCAGGGACAGAGGAGCCTGGCGGGCTATGGTCCACGGGGTGGCAAAGAGTCAGACACGACTGAGCGAGACTAACACACACTTTCCCCTCGTATTCTTTGGCTTACCCTATTCCTGACAAGCACATGAGTCAGTGGTTCAAGGTTTTATATTGTGGGCAGCCGCCAGGGAAAGAGGCAGCGAGCACAGACAAGGGCTAATACCCGCCTTTTACAAGGATCAAGTGACACAAGGGAGAAGGAAACACTGCATTTCCTCCCGGAGGAATTCCTACAGGACATAATCTGGATAAAATCGCCATGACAACACACGGGCCTGCCAGAGTGTAAACAGAAGTGCAGCTCTTTGATCTTCCAGCTTTAAGCAGTCCTAAGACTGGGACAGATGATATTCTTAACAGGGAAGAGCTCCCTCCTAGCTTTCCTCATCTATCTCACACTGGGTGGATGTGACACTTTGTCTTTAATACTGTTTTGGAGTCTGCTCCCGTCTTAGTAAGGAGGAAAAGCGCACTAAGTCAGTCTGCCACTGCTGTGACTCCGGCAGGTCCTCGGGTGTCCCCACCTCCCTGCATTCCTAGCCTTCACGCCAAGAGGTCCCTTCAACCTCCCAGGAGCTGGGGCTGAGCTGCGTCTCTCTCCCCAG
Seq C2 exon
GGCTCGATCAGGTTTCACTGCAGAAAGTCTCCGCTGCGCTACGCTGACACCTGCCCTGGACCCTCGCCCGACAGTGTTACTGGCTTTAATCAGATCCTGCTGGAAAGACACAGGCCGGGCCACGTGTGACCTCTTCTCCCCTCCCAGCCTCACCAGCTGGGCCATCCCCTGTGCCTTTTTTCCCACAAGGCCTTTTCCTGCCAGCAGCCTCGCCAGAGACATGTAATCAACACCCGGCTGCCAGACAACTCCCACAGGGACTCCGAGTGCACTCAGGGAGCCATGGCTCCAGCCTGCAGGCGGGCCAGCGGCTGCACCAGTGGCCTGGGGCAGCAGTCTACACATCCCCTGCCCCCACACCCTGATGGGTATCAGGGTTGGCAGTGACCAAACCAGGATTAGGAAACGTCAGGGCCTTCACTACCTTCACAGATCTAACTCAGCGGTGCTGGCCATCACTACAGTGGACACCCCACAGGCAAAGTCAGCTTGATATCAGCTCTAACATTGTGGCTGGGGGAAACTTTGCCTTGAGTTCCTTTAAAAGGAACAAAACCTTACTATTTAAATATTTGATTAATTTAATGTCAAGCAACTAGATTATAAATCAAGAATGATCAACGCAATATACCAAAGAAACACCACACCAAAATTTTAACACTGAGCACGTTTTTACTCAAATGGGTGTGGAAATTCAGTAAATATTTATGTCTTAATTCTATCAAAAATAAAACACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACGGCTTTCAGAGGAAGC
R:
TTACATGTCTCTGGCGAGGCT
Band lengths:
354-1452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]