RnoINT0096970 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72225967-72227462:+
Coord C1 exon
chr10:72225967-72226266
Coord A exon
chr10:72226267-72227132
Coord C2 exon
chr10:72227133-72227462
Length
866 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGCATCTTCTTTCTCCCTAGGGC
3' ss Score
12.71
Exon sequences
Seq C1 exon
ATCAGAATGGCCTGTCTTGCCTCTAAAGAACTGGATGGTATGGAGGAAAAACTCATGCCTCAGGCTCCCGGTACCCTGCGTTCCTCGCTGTCCCCAGCACACACTAGGTTCCTGGGAGCAATAATCCACCTCTGGCCCCTGGGACTGGTGCTAGCCAACTCAGCTGATGGCATGCGTGGCTTTCAGAGGAAACTGGTAGCCCATGCCTGCCTTCGGCTTCCCGCAAGCGGCCCCAGCAACAAAGTCCAGACACCACAACAAGATCAGGCTGGTATCACATCCATCAGAGCACTGCCCCAG
Seq A exon
GTATGTTCTCGTTCTGGGATAGTCATGGGAGACCTGTTGAGAAAGGCAGGGAACAAAGCTTGGAGCAGCACCGGGCTCCTAACCCTGCTGGGTAAGCCAAAAACTACAGGTGTGGATTACTGCCATTGTTTCAACTAATGACCTGGACTCTTAAGAGCCTTCAGTTCTAGAACCCTTCCAAACAGTGTGCCTTTGAAGGCTTGGCTCTGCCCCACAATATGAGCTCCTCAGTTAGGTGTGTATGTCACACAGCCATGTGTCCTCCACCATGTGGGTACAAGCAACATCCTACAGGGTAGGTGTGTAAAGACTAGAGAGTGCCATGGTTAGCCTACGTAGAACATAATTAGTCCTACTTGTAAGAATTGAGTGTGGCTATAATTTGTCACCTCAAATGAAACTGCATTTGGCAGTTTCTTAGATTTTATCACATGGTTCCTGGTTGTCAGCCAACGTATGGCCCAGCCCTTTGTGTTGTAGAGTCTGTTCCACTTGAGAGCAGACCCTCACAGCCTGGCCTTAGCTCAGCCCCTTCCCTGGATAACCTCGGTGATGGCACATCTCAGAACTTCCATATTCTCCTCTGTAAGCCTGGGTTAATACTTAGCCTAGTACAAGGGACCAGAGGAAAGAAATGCAGTCAACAAGATGCTATATATGTATAGACTATCTCTCTGAAATTGACAAGGGGTAAACAGAAGTGTTCTGATCTTCCAGGTATAACTAGTCACAAGATGACAGCCAATACCCTTATAGTAACAGACGCCTTCCTAGTATTTCCTGTCTCACAATGAATGGATGTGAGACTTTATTCCTATATTTATCTGAGTCCTGCCACTCATAGGATGCATCTTCTTTCTCCCTAG
Seq C2 exon
GGCTCAATAAAGTTCCACTGCAGGAAGTCTCCACTTCAGTATGCTGACATCTGCCCTGACCCTTCAGCCTCTAATGTTACTGGCTTTAATCAGATTCTGCTGCTAGAAAGACACAGGCCAGTCCAAGTGTGACTCTTCTACCCCCACCTGCCTGAGTGATCTTTACTGCTTTGTTTCCACAAGCCCTTTTCCTGCCAGCTGCCTTGCCAAAGACATCTGATCCCACACACAAGTGCCAAGCTATTCCCACAGCAACTCCAACTGACTCCAACTGCACGTGCAAGCAGATTCCAGCCTAAGCCAGGGCTTCATGGCCAAAGTGCCACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAACTGGTAGCCCATGC
R:
TAGCTTGGCACTTGTGTGTGG
Band lengths:
358-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]