GgaINT0132582 @ galGal3
Intron Retention
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4895033-4895853:-
Coord C1 exon
chr19:4895672-4895853
Coord A exon
chr19:4895176-4895671
Coord C2 exon
chr19:4895033-4895175
Length
496 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCCTGTCTTGCTCACTCAGGTA
3' ss Score
9.41
Exon sequences
Seq C1 exon
TGGGTGAATGGAGTGCAAGTTGTGGAGCATGAAGGCGGCCACCTCCCTTTTGAAGCAGATATAAGCAGGATTGTCCAGCGCAGCCCAGGGGTTCTCTGCCGCATCACTGTTGCGCTGAACAACACTCTGACGCCGCACACTCTGCCTCCGGGGTCAATTCAGTACATGAATGACAGAACAAG
Seq A exon
GTGAGCCACTAATGTGCTGCACTGTGAGGTTAACCCAGGGATGAGAGAACGGGGGTTTACTCAGCTGCTGTCTCATAGGACTCTCTGTGCAACTTAGAAGAGCATGGGTTGTGTTTTTACTAAAATTCATCAGCCAAGCAGTGAGAAGTTTAAGCTTCAGTGTGATGAGGAATCTACACTGAACTATTGCATCTGTTTTATACACAGGGAACTGAGATTAAGTGATTTGCCAAGCTGAATCAATGGCAGATTGAGAAGCTTGAGTTCAGCTGGAAGTGCAAGAGCCTGCTATCCTGAAGGATCAAACCCATTCAGTGCAGTAGATGTTTGTTAACTGGTAAAAGCCCTTCAGCATAGCATCAGTAGCACTGCTAAAATACACACCCATCCTGTTGTAAAGACTGTTTTACCAGCATGTTCCTAGCATCCACATGCTGCCTTCAGTTCTTGTGTAATGAAACATAATGCAGCCATTTTTCCTGTCTTGCTCACTCAG
Seq C2 exon
GTATCCCAAGAACTATTTTGTACAGAACACCAGGTTTGATTTCTTTAATTATGCTGGAATCCATCGCCCGGTTGTGCTTTACACCACACCTTCTGTCTACATAGATGATATTACTGTGACAACTACTTCATCAGAGAGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542:ENSGALT00000004011:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.6=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=PD(15.8=61.2),PF0070316=Glyco_hydro_2=PU(15.7=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTGCAAGTTGTGGAGC
R:
CAACGCTCTCTGATGAAGTAGTTGT
Band lengths:
318-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]