RnoINT0068787 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30204580-30205326:+
Coord C1 exon
chr12:30204580-30204761
Coord A exon
chr12:30204762-30205183
Coord C2 exon
chr12:30205184-30205326
Length
422 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
TCTTTGTTTTCCCATCCTAGGTA
3' ss Score
10.61
Exon sequences
Seq C1 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATCACCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTTCCGGGTCACCATCGCCATCAACAACACACTGACCCCTTATACCCTTCCACCGGGGACCATTGTCTACAAGACTGATCCTTCCAT
Seq A exon
GTAAGCAGCACCCTTTCCCTCCCCTCCCCTCTCCTCCCCTCCTCCCCTCTCCCATCCCCTGACCAGTGGACTTCCCTGTAGGGAGAATGACTCTAGCCCTGGGTCTGATGAGGAGAGCAGGGGTTGCATGCTAGGAGGGAGAGTGATTTCTGAAAGTTCTCAGGCCAGCTAGATCAAGAGACCCTGTCTAGGGAAAGAAGGCAAGAACCGGTGCCTAAGTTGTCTTCTGATCTGCACATGTGCACTGTGGTATACACACACACACACACACACACACACATACACACACACACACGGGAGAGAGAGAGAGCAGGCATGTGTGTGCTTGTGTGTGTATGTGTGTGTATGTGTATATGTGTGTGTGTGTATGTGTGTGTGTGTAAAAAGCCACAGGCCGATGGATCTTTGTTTTCCCATCCTAG
Seq C2 exon
GTATCCCAAGGGTTACTTCGTCCAGGACATAAGCTTCGACTTCTTCAACTATGCGGGGCTGCACCGGTCTGTGGTCCTGTACACCACCCCTACCACCTATATCGATGATATCACTGTGACCACTGACGTGGACCGGGACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGGATTCATGTGGTGGA
R:
CGTCCCGGTCCACGTCAG
Band lengths:
318-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]