MmuINT0075322 @ mm9
Intron Retention
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:130475797-130476412:-
Coord C1 exon
chr5:130476231-130476412
Coord A exon
chr5:130475940-130476230
Coord C2 exon
chr5:130475797-130475939
Length
291 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
CCTTTGTTTTCCCACCCTAGGTA
3' ss Score
11.2
Exon sequences
Seq C1 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATTAGCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTGCCGGATCACGATTGCCATCAACAACACACTGACCCCTCATACCCTTCCGCCGGGGACCATCGTCTACAAGACTGACACCTCCAT
Seq A exon
GTGAGCAGCATCCTCCCCCCCCCCCCTCCTGCCCAGCAGACTTCCCCATAGGGAGAATGGTTCTAGCTCTGGATCTGATGAGACCGGCGTCGCATGCTAGGAGGGAAAGTGATTGCTGGAAGTTCTCAGGCCAGCTAGAAGGTAGAACCAGTGCCTGAGGTTGTCTTCTGATCTGCACATGTGCACTGTGGTGTACACACACACACACACACACACACACACACACACACACACAGAGGAGGCGGATTTAAAAAGCCACACAGATAATGGACCTTTGTTTTCCCACCCTAG
Seq C2 exon
GTATCCCAAGGGTTACTTTGTCCAGGACACAAGCTTTGACTTCTTCAACTATGCGGGACTGCATCGATCTGTGGTCCTCTATACCACCCCTACCACTTACATCGATGATATCACTGTGATCACTAATGTGGAGCAAGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534-Gusb:NM_010368:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATGAGGGAGGTCACCT
R:
CGATGTCTTGCTCCACATTAGTG
Band lengths:
302-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: