GgaINT0132883 @ galGal3

Intron Retention

Gene

ENSGALG00000013781 | Q90WH5_CHICK

Description

NA

Coordinates

chr19:15649-16222:+

Coord C1 exon

chr19:15649-15767

Coord A exon

chr19:15768-16025

Coord C2 exon

chr19:16026-16222

Length

258 bp

Sequences

Splice sites

5' ss Seq

AAGGTATGG

5' ss Score

9.26

3' ss Seq

CCATCTTCTCCTTGCTCCAGGCC

3' ss Score

9.9

Exon sequences

Seq C1 exon

GTGAGCTCTCAAGGCAGCTGGAGGAGAAGGAAGCTTTCATCAACCAGCTGACGCGAGGGAAACTCACCTACACTCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGCCAAG

Seq A exon

GTATGGCCTTGTTGGAGAGGTTGGTAGGGCTGGAGGTTTAGTATGTGAGACACTATGACGTTAGGAGTGAGGTGGGAATGGGATGGAGTTGAGTTGGTTGGAGTCAAGGAGATTGAGTTAGGTTGGGTTGAATTTGTTTGGGTTCAATTGGTCTAAGGAATACCTGATGGCTTTAAGCTGATGAACACCAACACTTAGTGAGTTGGAGGACCTCAAACTGTCCCCAGTTAACATAGCTCCATCTTCTCCTTGCTCCAG

Seq C2 exon

GCCAAGAATGCATTGGCCCATGCCCTCCAGTCAGCCCAGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGATGGAGGCCAAGGCTGAGCTCCAGCGCGCTCTCTCCAAGGCGAACTCTGAGGTGGCCCAGTGGAGAACCAAGTATGAGACAGATGCCATCCAACGCACTGAGGAGCTGGAGGAGGCCAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000013781:ENSGALT00000040718:28

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.500 A=NA C2=0.518

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(11.4=100),PF059116=DUF869=FE(23.9=100),PF0205011=FliJ=FE(47.6=100),PF0003816=Filament=FE(35.5=100),PF0003816=Filament=FE(30.0=100)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(19.0=100),PF059116=DUF869=PD(19.0=47.0),PF0205011=FliJ=PD(7.3=9.1),PF0003816=Filament=PD(28.2=47.0),PF0003816=Filament=FE(50.0=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000039921