GgaINT0132883 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:21050-21623:+
Coord C1 exon
chr19:21050-21168
Coord A exon
chr19:21169-21426
Coord C2 exon
chr19:21427-21623
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCATCTTCTCCTTGCTCCAGGCC
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTGAGCTCTCAAGGCAGCTGGAGGAGAAGGAAGCTTTCATCAACCAGCTGACGCGAGGGAAACTCACCTACACTCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGCCAAG
Seq A exon
GTATGGCCTTGTTGGAGAGGTTGGTAGGGCTGGAGGTTTAGTATGTGAGACACTATGACGTTAGGAGTGAGGTGGGAATGGGATGGAGTTGAGTTGGTTGGAGTCAAGGAGATTGAGTTAGGTTGGGTTGAATTTGTTTGGGTTCAATTGGTCTAAGGAATACCTGATGGCTTTAAGCTGATGAACACCAACACTTAGTGAGTTGGAGGACCTCAAACTGTCCCCAGTTAACATAGCTCCATCTTCTCCTTGCTCCAG
Seq C2 exon
GCCAAGAATGCATTGGCCCATGCCCTCCAGTCAGCCCAGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGATGGAGGCCAAGGCTGAGCTCCAGCGCGCTCTCTCCAAGGCGAACTCTGAGGTGGCCCAGTGGAGAACCAAGTATGAGACAGATGCCATCCAACGCACTGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(35.8=100),PF0003816=Filament=FE(12.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(27.5=45.5),PF0003816=Filament=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAGGAGAAGGAAGCTT
R:
CCTCCTCCAGCTCCTCAGTG
Band lengths:
297-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]