Special

GgaINT0133917 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr21:4180589-4181249:-
Coord C1 exon
chr21:4181137-4181249
Coord A exon
chr21:4180752-4181136
Coord C2 exon
chr21:4180589-4180751
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCTTTCTGCTCTGACTTTAGAGC
3' ss Score
8.42
Exon sequences
Seq C1 exon
CTATTGAATGCAATCCAGCTCTTTGGAGCTAACCTGGATGACTACCTTCATTTATTACTACCTCCCATTGTAAAGCTGTTTGATGCCCCAGATGCCCCAGTGGTGGCTCGCAA
Seq A exon
GTAAGTGTTAGTGGCTTTGCAGTCTCTTTTTGACTGTGGCATCCCAGTTCCTCAGTGGTTCCCCTGGCCATGTATAGAGTGAAATAACTCTTAGTTTTCTGTGTTAAATCATTATGGAAGGCTGTTCTCAGTTGGACTTTACAGCACTGTTATTTGTGTAGAGACTATTAACTTTCTGTTCTCACCTGTCAGCATTCTAGTCGCTGCAACTTGCAAGCTGTCCTGCAAGTGAGAGCTGCGTTAATGCTTTTGGTGATATTTTTCCCATTACTTCTGATGCCTAGGATGTCTGAGCATGAATCACTTATGTGTTTTTTTACATTCCATTTCTCCTGTTGTGCCATGAGAGATGAGAAATCTTCCCTTCTTTCTGCTCTGACTTTAG
Seq C2 exon
AGCTGCTCTTGAAACGGTGGACCGCTTGACAGAGTCTCTGGATTTTACTGATTATGCTTCACGGATTATTCATCCCATTGTGCGAACACTAGATCAGAGCCCAGAGCTACGAACAACTGCAATGGACACTCTCTCCTCTCTGGTATTCCAGCTGGGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGAATGCAATCCAGCTCTTTGG
R:
TGGAATACCAGAGAGGAGAGAGTG
Band lengths:
262-647
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]