MmuINT0102049 @ mm9
Intron Retention
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:147858419-147858897:+
Coord C1 exon
chr4:147858419-147858531
Coord A exon
chr4:147858532-147858734
Coord C2 exon
chr4:147858735-147858897
Length
203 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TTGGCTTGCTCTTGTTGCAGGGC
3' ss Score
8.34
Exon sequences
Seq C1 exon
CTGTTAGCCGCGATCCAGCTGTTTGGCGCCAACCTGGATGACTATCTGCACTTGTTGTTGCCTCCGATTGTGAAATTGTTTGATGCCCCTGAAGTCCCGCTGCCATCAAGAAA
Seq A exon
GTAAGCACCCTATTTTGCCATCTTTGTGGGGTTTTTCCGTCTCTCATTATTTTAGTTCACAAATGTTCCAGATTATGGAGATCTTACTGCTGCCCTCCTAGTGTGTAGATCTTGGATTCATGTCACTCACAGGACCTCACAGCCATTCCTTCCCATTCCTCTCTGCCGTTGTTAAGGTAGCCCTTGGCTTGCTCTTGTTGCAG
Seq C2 exon
GGCAGCGCTGGAGACGGTGGACCGCCTGACAGAGTCCCTAGACTTCACTGACTACGCCTCCCGCATCATTCACCCAATAGTTCGTACGCTAGACCAGAGCCCAGAGCTGCGCTCCACAGCCATGGACACTCTGTCTTCGCTTGTCTTTCAACTGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-Mtor:NM_020009:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTAGCCGCGATCCAGC
R:
CTTCTTCCCCAGTTGAAAGACA
Band lengths:
276-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: