GgaINT0133917 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4179920-4180580:-
Coord C1 exon
chr21:4180468-4180580
Coord A exon
chr21:4180083-4180467
Coord C2 exon
chr21:4179920-4180082
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCTTTCTGCTCTGACTTTAGAGC
3' ss Score
8.42
Exon sequences
Seq C1 exon
CTATTGAATGCAATCCAGCTCTTTGGAGCTAACCTGGATGACTACCTTCATTTATTACTACCTCCCATTGTAAAGCTGTTTGATGCCCCAGATGCCCCAGTGGTGGCTCGCAA
Seq A exon
GTAAGTGTTAGTGGCTTTGCAGTCTCTTTTTGACTGTGGCATCCCAGTTCCTCAGTGGTTCCCCTGGCCATGTATAGAGTGAAATAACTCTTAGTTTTCTGTGTTAAATCATTATGGAAGGCTGTTCTCAGTTGGACTTTACAGCACTGTTATTTGTGTAGAGACTATTAACTTTCTGTTCTCACCTGTCAGCATTCTAGTCGCTGCAACTTGCAAGCTGTCCTGCAAGTGAGAGCTGCGTTAATGCTTTTGGTGATATTTTTCCCATTACTTCTGATGCCTAGGATGTCTGAGCATGAATCACTTATGTGTTTTTTTACATTCCATTTCTCCTGTTGTGCCATGAGAGATGAGAAATCTTCCCTTCTTTCTGCTCTGACTTTAG
Seq C2 exon
AGCTGCTCTTGAAACGGTGGACCGCTTGACAGAGTCTCTGGATTTTACTGATTATGCTTCACGGATTATTCATCCCATTGTGCGAACACTAGATCAGAGCCCAGAGCTACGAACAACTGCAATGGACACTCTCTCCTCTCTGGTATTCCAGCTGGGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGAATGCAATCCAGCTCTTTGG
R:
TGGAATACCAGAGAGGAGAGAGTG
Band lengths:
262-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]