RnoINT0095456 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165299144-165299632:+
Coord C1 exon
chr5:165299144-165299256
Coord A exon
chr5:165299257-165299469
Coord C2 exon
chr5:165299470-165299632
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TTCACCTGTTCTTGTTGCAGGGC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTGTTAGCAGCGATCCAGCTGTTTGGCGCCAACCTGGATGACTATCTGCACTTGTTGTTGCCTCCGATCGTGAAATTGTTTGATGCCCCTGAAGTTCCACTGCCGTCGAGAAA
Seq A exon
GTAAGCACCCCGTTTTGCCAGGCCATCTTTGTGGGTGGTTTTTCTTTTTCAATCTGTCTTTATTTTACTTCAGAAATGTTCCAGATTATGGAGCTCCTACTGCTGCCCTCCTGTTGTGTGTATTTTGGACTCATGTCACTCGCAGGGCCTCACAGCCATTCCTCCCCTCCCCTCTGCTGTTGCTCAGGGAGCCTTCACCTGTTCTTGTTGCAG
Seq C2 exon
GGCAGCGTTGGAGACAGTGGACCGCCTGACAGAGTCCCTGGATTTCACTGACTATGCCTCCCGCATCATTCACCCGATTGTTCGCACGCTAGACCAGAGCCCAGAGCTGCGCTCCACAGCCATGGACACCCTGTCTTCACTTGTGTTTCAACTAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTAGCAGCGATCCAGC
R:
CTTCTTCCCTAGTTGAAACACAAGTG
Band lengths:
276-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]