HsaINT0106375 @ hg19
Intron Retention
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:3942]
Coordinates
chr1:11272369-11272965:-
Coord C1 exon
chr1:11272853-11272965
Coord A exon
chr1:11272532-11272852
Coord C2 exon
chr1:11272369-11272531
Length
321 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
3' ss Seq
TATGTTAGTGATTGTTGTAGGGC
3' ss Score
3.67
Exon sequences
Seq C1 exon
TTACTGGCTGCAATCCAGCTGTTTGGCGCCAACCTGGATGACTACCTGCATTTACTGCTGCCTCCTATTGTTAAGTTGTTTGATGCCCCTGAAGCTCCACTGCCATCTCGAAA
Seq A exon
GTGAGCACCTCCTCTTTGGGACTAGCAATCTTTAAGCTTTAATGTTTTGTTGAAAATGTTCATTTCTTAAGTTCCCAGGCCATCTTTCTATTTTTTTTGTTATTTCAACTCACATTATTTTAGTCTAGAAATATCCCAGGTTTATGGAAATCTTAACTGTCCCTATCCCATTGGAATAAATGTTGGATCCATGTCATCCAAAATACCTTAGAAGCCGTTCATTCCCATCCCTTTGGTGCTGATTGTTAAGCTCACCCTCAGTCACGTCTCTTCCTTGGAGATTGTATGTTAGCAGTTACTGTATGTTAGTGATTGTTGTAG
Seq C2 exon
GGCAGCGCTAGAGACTGTGGACCGCCTGACGGAGTCCCTGGATTTCACTGACTATGCCTCCCGGATCATTCACCCTATTGTTCGAACACTGGACCAGAGCCCAGAACTGCGCTCCACAGCCATGGACACGCTGTCTTCACTTGTTTTTCAGCTGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793-MTOR:NM_004958:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAATCCAGCTGTTTGGC
R:
TCCCCAGCTGAAAAACAAGTGA
Band lengths:
264-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)