GgaINT0134437 @ galGal4
Intron Retention
Gene
ENSGALG00000004568 | CELA2A
Description
chymotrypsin-like elastase family member 2A precursor [Source:RefSeq peptide;Acc:NP_001027562]
Coordinates
chr21:5543280-5544234:+
Coord C1 exon
chr21:5543280-5543368
Coord A exon
chr21:5543369-5544136
Coord C2 exon
chr21:5544137-5544234
Length
768 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGATATATATTGATCCTAGGCC
3' ss Score
5.62
Exon sequences
Seq C1 exon
CCCTTGGCTGCGGGGTTCCTGCCTACCCACCTGCTGTGTCTCGAGTTGTTGGAGGGGAAGATGCAAGACCATACAGCTGGCCCTGGCAG
Seq A exon
GTGAGTCCTTATCTGCTTCCCTGAAATGTTTAGAGCTGTGATACCCCGTGTGCCACATCTTGCTGCCTAGAAAGGTCTTCATGTTCTTGCAGTAGACCAGCCCATATTTAGCAGGAATTCTGTAAAATTCAGTGGGCAGTATAATGCCTACTGGAACGCAGTTGTACGTTGAGTTAACAAATTGATTTTTGAAGCAAACAAAATGCTCTGTTTGGACCAGACTTGAACTTTGGGGGGAAAAAAAACCAAACCCAAACATTAAAAAAAAACAAACTTTTGAATAATAGGAAAGGAGGAAAACCTTCTCCTGAAGACAGGAACTCCTGAAAGGAGGTTGTGGTGAGGTGGAGGTTGGCCTCTTCTCCCACGTAACAGCAATAGGATGAGAGGTAATAGCCTCAAGTTGAGCCAGAGGAAGTTCAGGTTGGATATTAGGGAAAAGAACTCCCCTGAAAGAGCAGTGATGCAGTGGCACAGCTGCACAGGGAAGTGATGGGGTCACCATCCCTGGAGGTGTTCAAGGAATGTGGAGATGTGGCACTGAGGGATGTGGTGGGCTGTACTGGTGGTATGTGAAGAGTTGCACTAGATACTCTTAGAGGTCTTTCTGACCTTGATGGTTCTAAGATTCTTTGAAGCTCTTCTAGCTTAAAAACCTCTCATTACCTCCAAGTGGCAAGTTGTGATACATGTGCTGGAAGAAAAACGCAACATTGGAAAAATCAGCAAGCAAAAATCTGAGCCTTGCTTGATATATATTGATCCTAG
Seq C2 exon
GCCTCTCTTCAATATCAATCAAGTGGTAAATGGTATCACACCTGTGGAGGAACCCTCATTGCAACCAACTGGGTGTTGACAGCTGCACACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
NA
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]