GgaINT0136032 @ galGal3
Intron Retention
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2670026-2670411:-
Coord C1 exon
chr22:2670363-2670411
Coord A exon
chr22:2670131-2670362
Coord C2 exon
chr22:2670026-2670130
Length
232 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
CACCTCACCCCAACCCACAGCTG
3' ss Score
5.78
Exon sequences
Seq C1 exon
GGAAGCAGCACTGAGGAGCGAAGGAGGACACTGACACCTTTGTCTCTGC
Seq A exon
GTGAGTGATATAGCATCCTAAGTGAGAGCAGTTTTGGTATGCAGCCTACTGGGTCTGTTCAAGCCTCCCACCTCCTTTGCTTAGGGTAGGGGTGCCCAGGCCAGGAGGAAGGGCTGGGCTGACCCTGCTGCACTTATGTGCATGGCATGCTCCTGTTCCCAGAGAGTTTCTTTGGTCCTGCCTGCAGGGCTATGATGAGCCCCTGCATTCTGCACCTCACCCCAACCCACAG
Seq C2 exon
CTGGAGTTGTGACCCCCTCTTCTCTTCCAGGCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCACTGAGGAGCGAA
R:
CCAGCTGAGGCCAAGCTG
Band lengths:
149-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]