HsaINT0008060 @ hg38
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41688156-41688589:-
Coord C1 exon
chr8:41688511-41688589
Coord A exon
chr8:41688231-41688510
Coord C2 exon
chr8:41688156-41688230
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AATCTAATGCTTCTCCCCAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GGAAGTGGAGCCGAAGATAGGAGAAGGACCCCGACGCCCCTGGCCCTGCGATACAGCATTCTCAGTGAGTCCACACCAG
Seq A exon
GTACGGCCTCTGTGTGATGATGCATGCTTGCTCCCTTCCCAAGAAGGGTGGGCGTGAGCTCATCTCCCCGCAGCCCTGTGAGGGTTCTGCTGAGGTGCCGCTCGCTCAGCCAGTTCCAAAAGCAGCTGCAGAGCTGACTCGGGTCTTCCCCTGATCTTGCAGAGAGTCTAGACAATCACCCCAGTGCACACGGAAGCCACATCCATCACAGGCCGTGTCCTCAGGCCTGTCAACTGTGTCCTGCCCTGGCTACTAAATGAAATCTAATGCTTCTCCCCAG
Seq C2 exon
GTTCTCTCAGTGGGACAGAGCAGGCAGAGATGAAGATGGCTGTTATCTCAGAGCACCTCGGTCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534:ENST00000347528:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=NA C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGGAGCCGAAGATAGG
R:
AGCTGAGACCGAGGTGCTC
Band lengths:
148-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development