RnoINT0017367 @ rn6
Intron Retention
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73765376-73765805:-
Coord C1 exon
chr16:73765727-73765805
Coord A exon
chr16:73765451-73765726
Coord C2 exon
chr16:73765376-73765450
Length
276 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
3' ss Seq
AACCCAATGCATCTTCCCAGGTT
3' ss Score
5.19
Exon sequences
Seq C1 exon
GGCAGTGGAGCAGAAGACAGGAGAAGGACCCTGACGCCCTTGACTCTTCGCTATAGCATTCTCAGCGAGTCCCGGCTGG
Seq A exon
GTAGGACCCCCTTGCCTAGCACCTCAATGTGCTTGATCCCATAAGAATGTCACTGTGTTCCCAGAGAGGGAACCTGCCAATGACTCTGCCAAGGACTCTGACCTGGCACCGTTCACCTCACTGTGTCTGCAGCAGGCAGAGCCCTTTCCTTAGGCCTCTGCAGCGATCTGAAGGCCCCTGTGTAACTTGAGCGGCCTACTGTGAGGGCCACGTATCAACCTTATCCATGTTGTGACCTGCCTAGGCTGTTAACTGCAACCCAATGCATCTTCCCAG
Seq C2 exon
GTTTTACCAGTGACACAGACCGTGTTGAAATGAAGATGGCTGTCATCAGGGAGCACCTCGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241:ENSRNOT00000064070:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAGCAGAAGACAGGAG
R:
CCAGCTGAGGCCGAGGTG
Band lengths:
148-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]