DreINT0000930 @ danRer10
Intron Retention
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68189352-68189656:-
Coord C1 exon
chr5:68189572-68189656
Coord A exon
chr5:68189427-68189571
Coord C2 exon
chr5:68189352-68189426
Length
145 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGATGGTCTGGTTTCTGCAGCAT
3' ss Score
6.96
Exon sequences
Seq C1 exon
ATTATGGGCAGCGATGAGCGGAGGAGGACTCTGACTCCTCTGGCTCTCAGAGAAAGATACAGCGCTCTGAATGAACCGGCAATGG
Seq A exon
GTAAGACGGCTCCCACACTGACTTCTCCTGCATGTTAAGCCCCCAAATCTCATACAACCTTTGCCTGACCCTGCTTTGAATAAGATGTGAGCTGCAGCATCAGATTTGCTGAACTCTTGAGCCAATGATGGTCTGGTTTCTGCAG
Seq C2 exon
CATCACTGAGCGCCATGGAAAGGACGGAGTTAAAGATGGCTTTAATAGCTGAACAGCTAGGCCTGAGCTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093:ENSDART00000137443:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(16.0=52.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGAGCGGAGGAGGACTC
R:
CCCAGCTCAGGCCTAGCTG
Band lengths:
146-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]