HsaINT0008060 @ hg19
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41545674-41546107:-
Coord C1 exon
chr8:41546029-41546107
Coord A exon
chr8:41545749-41546028
Coord C2 exon
chr8:41545674-41545748
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AATCTAATGCTTCTCCCCAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GGAAGTGGAGCCGAAGATAGGAGAAGGACCCCGACGCCCCTGGCCCTGCGATACAGCATTCTCAGTGAGTCCACACCAG
Seq A exon
GTACGGCCTCTGTGTGATGATGCATGCTTGCTCCCTTCCCAAGAAGGGTGGGCGTGAGCTCATCTCCCCGCAGCCCTGTGAGGGTTCTGCTGAGGTGCCGCTCGCTCAGCCAGTTCCAAAAGCAGCTGCAGAGCTGACTCGGGTCTTCCCCTGATCTTGCAGAGAGTCTAGACAATCACCCCAGTGCACACGGAAGCCACATCCATCACAGGCCGTGTCCTCAGGCCTGTCAACTGTGTCCTGCCCTGGCTACTAAATGAAATCTAATGCTTCTCCCCAG
Seq C2 exon
GTTCTCTCAGTGGGACAGAGCAGGCAGAGATGAAGATGGCTGTTATCTCAGAGCACCTCGGTCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-ANK1:NM_020476:34
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGGAGCCGAAGATAGG
R:
AGCTGAGACCGAGGTGCTC
Band lengths:
148-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)