GgaINT0136157 @ galGal3
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1876268-1882085:+
Coord C1 exon
chr22:1876268-1876487
Coord A exon
chr22:1876488-1881941
Coord C2 exon
chr22:1881942-1882085
Length
5454 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTGTATCTTTTCCCTTCAGGCC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GGAAATGATAACAGCGAAGCCCTTCCAGAGTCCATCCCATCTGCTCCTGGAACACTGCCTCACTTCATGGAGGAACCAGATGATGCCTACATTATCAAAAGCAACCCCATTGTCTTACGGTGCAAAGCCATGCCAGCCATGCAGATTTTCTTCAAGTGCAATGGTGAATGGGTGCACCAAAACGAGCACGTGTCAGAGGAAAGCATGGATGAAGCTACAG
Seq A exon
GTAAGGGGCAGCGTCATTGGGGAGGTGTAACTGAATGTGGTGTCTGTCAGCACTGTGTGGAACGGAGCAGAACGCATTATGAGAGGCACAACCAGAACTGGGGCTGTGACACAGTTCCGTGGCAGAGAGCTGCGGGGTGCGCTGAGCTGGAGGAGTGGTTATTTGCTAAGTGACGAAGTTCAGCAGGAGAAATCCATTGTGTGAAAGTGTCCCTCTCTAAAGGAAGGGAAATGAGAAAGTTGAAAGTGATTAACAGATTTGATCATGCTTCCAGCACACCCTCTATCTTTTCTCATTTAGAAGCATCTTGATAAGTATTGCAAACCAATTTAATGCTGCGCTGTCTTGTAATTTCACAATGCAGTTTTGTTATTGCTTTCCTGCTCTCTTTAAGTTCCACGATTGCTAGGCAACTCCGCGTGTTGGAAATAGCAGCGTAGGCACAGCATCCTCTCCATCAATACAAGAAATTCCTCTTTAGAGGGGAAAAAACCACACAGCTAAAAAAGAAGATGCATCTCCTAAAGTGACAGTGGTGTTTGGCATTCTCTGTAAGTGACACATCCTGAAGAAATTTCATCCTAACAGGTTTTTGTAAATGCTAATCTGGGTGAGTTCTAATTTCTCCAGTTACCTTTTCAGAACGAATTTAATAGGCGTAACCTTTACTTCTAAAGGCACTGCTGAATCAATATAGAAGAAATGTCGTTCCTAAATGTTTTTCTTCCATATGGTTAATGAAAAGCTGTCTTGTGAATGCTGCAATTATGTTCTGTAAGCCTTGGATTAATAATAGAATAAAAAAAAGATGAAGCAATGAAGCAATGTTAGGTGGTAGGTTTTCTGTTTTGCTTTTAAATAACACCCGGTAACACTGAGTTTTGAGACATGGAGGCACAGGCTTAGCAAATGGGATCTGGAATATAAATGATGCAGATTTGAATTTAGCCCAAGGGCAGAGCTAGCACTAAAAGTATTGTTTGCTGTCTGCACGCGGGCGTGATCCCAATAGTTAATGTGCTCTAAAAGCCGTGATGATCCTCAGCACACAGAAAGGTGCAAGGAATGGCTATGTTGGGTGTTGGAGGACAGGCCTGGATGTTCTTCTCTCCCACAAACTACTTCAGAATCTTTCCTCAGCTTTCAGTAAACATCAGATGTGAGGTTTTTTGGGGGGGAGTAAATGAGTTCTCTGACAGTCCTCTCATCTCTGGAGCCAAATCCAGGGAATAAACATTTCTGCTACCCATCACTCTGTTCTGCACACTGCGTGGGCTCCATCTGTGAGAAACTGCACTCAGTTTATGGCACAAGTGGTGCCTCTGGTTAATGAGTGTCAGTGTGTTCACCAAAAGGAAGTCACAGTGTGCAAAAATGGGGCTGCCCTTTTCCATCCTTCCGCTCTTTGGTGTGTGATGGAAATGCAGAGAGGAACTGTAGAATAGTGGTGAAGAATAGAAACAAAGAGGTGAGGAAGGCACACATCTTAGCATCTCTGCAAATTCCTGCCTGTGTGTTCTTAGCCAGGCTGTGCATGGGGTGCGTGATGAGAGCCAGTATGTGGATCTGAGGAATAGAAGCAACATGAGAGGAAGGGCATCAATTTTATAGCTCTGTATGGTATGTAGTTAAATGCTGGGCTGACACAAGCTGGCTGCCTGAGGGTGTACAAAGGGTTCTGGGGGCTGATGGTTTGCATTGCAGTCTGTGCTGCAGTGGCTTTGCTGCTGCTGATGCAGGGCAGGTAAGGCAGCACGTGCCATGCCTGATGGTTGCACTGCCATGGTCCACTGCTCAGTTACAAACCCCATTATTTCATCTTCTGCCTTAGTTCCTGAGCTGCAAAAAAGGGATGGAGATCCACGGTATGCCTTTTTTGTTTGTTCCATAAGCATTGCAGCGGGGGAACTTTGCTCACTCTGTGTGCTCAGAAAATAAGAGCCTGAGCTAATAGATCCTACAGCGATAAGAATATAACAGTTATGGTTTGACGTATTTCCTTCTGCTTTTCTTCTCTCTTCTGAATGTTGAGGACTGCACCTCCAAATTAGTTTACAAATATCTCAACTTCGGTCTTACTGCAGGATCAGACCACTAAAAGTAACTCGAGTTTCCTTGTCTGATAAATAAAAGGATTGCAGCAATAACTGCTGTCAGCGTTTTTTCTCATTTAAACAAATAAAGCTGACAAATGCTGAAGTTCTGTGCAGCTCTGTTATGTTTAGTACACGGAGAGCAATTATTCATCTGCTGCCAACATTAGTCTATCTGCAGCTAAACCATCCAACAGTGCAGAAAGCTTATTAGCATCTCAGTACTACAGTCATAATTTTATATTCTGGAAGGCTGTACTGTGTAACAAAAGATGATGGTTATAATTTGCACAATAATTTAAAGGGTTGCCTTGCAGTGCTTATTAGAGTTACACGAGTTACAGGTAAAATGTTGTTCTTGTTTATGATGTGCCTGTTTTTATTTGCCTGGATATCCTTTTTCTCTGTGTCATTTCCTATGAATGTTTTCTCTGGCGTTTTTGAGACGCAGATGGTGAGTGAATATATCTGCTGGTGAAATGCAGCGATGATAAATGAAGAATATATGCCTCTGTTCCCCGTGGGTTTGCTTTCTGTAGTTGGTTCTAAAATAAGTGGAAATAGGTGTACTTTCTCCATAGACAACACACAAACAACTTTCCCCAAAGAGTGGATGTCCTCTGGAGGTCCCCTCCAACCTCAATTCTGTTATTTTGGCTGCATCTGTTTCATGGATTGGCACAGCAGGGCAGTCCAAGGGGCTGAATTCCTGCCCTGCTTCTCCCCTTCTCACTGCATCTCTCAAAATCATGCACTGTTTGGCTGCCTGATTCAAAGCTCATTAAGTGTTGCTTCAGGCTGATATACATCAATTAATATTAATTAACATTTCTGTGAAAGGAAGAGCTGGGCTAGAGAGCATTCTACCTTAACAAACCCTAATCTGTAGCTGCCTTTATTCAGTGGTGACTGCTCAGTGTTGTACAGCATCAGTGAGCCTAGAAATGGTTCCTGCTCTTCCACACATGATGATTTTTCAGGTTCGTATCAGTAAAGGCTCTGTTGCTTGCACCAGCAGCAGCGTAATGTGCAGTTCTCAACTCCTCATTTCTGTTCACTGCTTCCAGAAATTCCTTGAGTAGCTTGGGAACTGGGAGAGTTCAGGAGAGATGGAGTGTATCATAACCAGGTGGGGAACGGCCGGGGAGGTTGGAGCTAATGGCTAGTGAGGGGATGAGTGGGTTTTCCCCAGGAAGATGCTATCTGAGGTTGTGGTGGGGATAAGCTGACCATGGAGGCTATCTATAGGTAGTTGGGTACAGCAGGGTGCCCTGTAAACTTCTTACTTCTGTAGCAGTTCAGTCTGCTGCACCTTCGTGGCAATGCACAGAGCAGCATTGCGTTTGTAGGCAGCGCAGGCTCACAGGCTGATAGGATGTACGTGGCTGCACAGCAGTGTGCATCAGCTAATTGAGTGCTGGGTGAGTGATCCCTGACCGGAGACAGCCATTTCAGAAAGGTCACTGTTTGTCAAGGACTGATTGTTTTTCATCCTTGTCAAAGAAGTCTTTAAGTAGATGGGTTGCAACCTCGTTGGACATGGCTGCAAATTAGCTTGGATTTGGAGGCTTGAGCTTTTGAGGCTCTGGAGCTTTGAAATCATCCAGGGATTGCACACAGCTTGATTTGTCATGGGTACAGTATCAATAAAATGTCTGTCAGTGTTGTCCAGCATGACAGAATGAGGAATGTTCAGCCTCTGGGACCTGCTGTGTCAGGTCGCCAGGACTCCAAGGGTCTCTAATGGGACTTATTGTGGCTGCTCTTATCACTAACCCGTAAACATCACTCTACAGAAAGGTTGTATGGCTGAGAACTTGGGCATTCATTGCTCTCAGAGTAGCCTGAGTGTTTGCTTTGAGATGGTGCAGTTTCATCATACGCCTTATAGCCCATGTCAGCAGGGAGGGGGGTTTCCAACAGAACTGTTGGGTTCTGCCAGTGATGTTTTCATCATTAGAGGAACGAAGGGAAGCTTTTGTAAACAATTTTGTTGAAAAATGCATCAACGTAGTAAAAACAAAGCACAAATAGAAACAACCAGGAAAGCTCTGTTTATTTATTACAGCGTGGATAAATATTTGAACTACTAAAATGATCTTTGAGACAACTGAGGAAGCTCTTGGAGGTGTGGCCGTATCTTAAGATGTCCTTGGGAAGCATGACAAGCCAAACAGGAGAAATGAAAAGAAACAATGTGAAATTGTGGAAACATAACAAAAATGTTGTATTGCTTTATAGCATTTAAAGCTCCTCTGCCCTTCCCCACTGCTCTCCAATGAGCGTCCCCAGTGGCCTCAGCTCTCGTCTGTCAGAGGACCAGGCTGACTTCATGGTGCCTTCCCGAAGTGCACTACCCAGCCATTTGTTAATGATGCCTGAGATTAAGTGGAAGCCAATTTTTATGGAGTTCAGGTTTAGAAACTTCTTGGTGCTTTATAAATTCACAGGCATGAAATATTTTAAGATTGAGTTTTCATTCATTTCCAGTGAAGGGGAAATAAGCACCTTGGGACTGCACCAAAGGAGAGAAGGAAGGAAGCAGAAGGCATGATTTTCTTCTTCGATTTTCAAATTAATGTTTTTCTGACTAGCTCTCCTAAGTGATTCTTAATGCCTCTTCACAGCGATTTGGATTATATTTCCTCTCCCCAACGTTGTCATACGAAGGTAGTTACAGATTTAGCATACAGACAGATATAGCAAACATTGTGATTGTATAAAATAAGGTGTCAGGCTTAGAAGGCCTCTATTCTTGTTATCTTCTCTGAAACAAAAGCTTCTGCTCTGAAGGGCAATGCTGCTGAATGTTGGCTGTGTGGGGGGGTTTTGGAAATGGCAGCAGGAGGAAAAAAAAAGCATGAGGCTTTTCCCATCGTTACTCCTGGTTTGCCTTCATTATTCCATGAGATCCCTTTCTGAGCTATTTAGATGAACCTGTTTAATTCCTATCACTTATGCATAGTTCTGGTTGTTCGACTTCACTGGGGGTAATGGATGGGCCCACCAGGGTACTTCAGAAGGAGTTTCAAGTTCACTGAGTGTGGTAAATGGGAATACAATTTCACTGTATGTTATGCAATGCCAAATAATCCCTCTGAGAGACAGAAGGCACAAGAGAAAAGGTTTCTGACTCTTGCAAAGGCCACAGTGGGTGGGTAATTCATTTCATTTGATGCATTTTGACCTATTCAGCTTTTAGGATTTAATTAATGGTAATATATGATTGTCAAAGTAATTAAAGCTTTGCCTTGATTAAAAATGGAATTGTTTAATTAAAAGAAAAGCGTCGGCTAACCTCAGCTTTATGCCCAAGGAAGATAGCTCACATCACTTCATTTTCTGTATCTTTTCCCTTCAG
Seq C2 exon
GCCTGAAGGTCCGGGAGGTGTTCATTAATGTGACGAGGCAGCAGGTGGAGGACTTCCATGGGCCAGAAGATTACTGGTGTCAGTGCGTGGCATGGAGCCATCTAGGGACCTCGAAGAGCAGGAAGGCGTCCGTCCGCATCGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]