GgaINT0141274 @ galGal3
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3971614-3972135:-
Coord C1 exon
chr26:3971974-3972135
Coord A exon
chr26:3971818-3971973
Coord C2 exon
chr26:3971614-3971817
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGTTCTCTCTGCCCCCCAGCCA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCGGTGCTGCACCCTGCTCCGACTGCCAGGTGGCCTTTGTCAACCTCAAGTGTGACTCATCCAAGAAGGGGAAGGGCCGCCGGGCTCGCAACTCCTCCGGCAAGGAGGTGACGCGCATCACACTGGAGTTTGAGGCAGAGATCAAACCGGAGGAGACCACAG
Seq A exon
GTGGGCTGGGTGGAATCCCGTGGTGTCCCCAAGGAGAGCTGCCATGGCACTCATTCTGTGCTGGCTGGGCATCCCGCAGAGCCCGCAGCTCTGCATGACAGAGAGAATCCTGTTGGGTTTCTCTCTTCTCTTATTGCTGTTCTCTCTGCCCCCCAG
Seq C2 exon
CCAGCTGCAACCTGCACTGCCTGCGACAGAAAGTGGAGAAAAAGCTCAAATCGGCCATCAAAGCCCTGAAGAAATCCATCAACCAGGAGAGGTTCCTGCTGCGCTTCGCTGGGATGGAGTACGAGGTGGCGAGGAAGCTGAGCGTGGCCCCGGAGCGGCAGGAGAGCTGCGGGCCGGGCCAGCAGCGCCTGGGCACCAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCCTTTGTCAACCTCAA
R:
TCGTACTCCATCCCAGCGAAG
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]