GgaINT1006774 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1088667-1090086:-
Coord C1 exon
chr15:1089969-1090086
Coord A exon
chr15:1088839-1089968
Coord C2 exon
chr15:1088667-1088838
Length
1130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCAAGTTTTTTGTCGCAGTCC
3' ss Score
4.72
Exon sequences
Seq C1 exon
GAATGTAAGTTCAGATGGAGCAGAAGCACGCAGAAGGCTAAGAGAGTGTGATGGCTTGGTGGATGCCCTACTTCACGCCCTACAGTCTGCAGTTGGCAAGAAAGATACGGACAATAAG
Seq A exon
GTGAGCTTGAGTATTAAAACATGACTGGTGTTTCTGTTACTTTAGTCTGAAGGTGTCACACTTGGTCTGACTTCTGTTTTGCTAGTTTTAGAATGGGATTGTGCTTGCTTCTTAAAACACAGTAATTGCCTTCCTCTCATCTCTGTCACGATACCCATGATAGTACTGACAGAGGATCAGCATGCTGCTGCATTACTTTATATGGCTGTTGAGATGAGCAAAGGCAAGTGGCTGTGATGGGTGAGGACTCCTTTCTTATCCTGGTGGTATTATTGCTGTTGTTCTGCATTACTTAAACAACTTTCCTAAGTGCAGTCTCCAAATCAGAACTGAGTCCTGTTGTACTGTGCTTTGCACAGCATCAGCAAAGGGATTAGTTCTCATTTTAAAGAGTTTTTTCAATGCCATCTTAAAATGGTGTAGCGCCAAGGTGTTAGACCTGCAATGCTTTTTGTGGCTTTTTTCTTCTGTGGGTACAAATGTTGATTCATCTGCTTTTATCATCATTTCATCTTGTACTGTTTAAAAGAATGTTTAAAGGCCTGTCACTTAATCAGGTATTTTGGAAGTGGATTTTGTAACCACCTGCTGGCTTCCATTGCAACCTACGGAGCGTTGCTCATGTCAAAATCTGATGTGTTATATATTATCAGCTATTACTACAGAGCAATGTGTGTTCTCATTCAACTCCTCACATAGTCTTCATTCTGACTCAGAGGAAATGTAATAAATAGAGTCTCTTGGGGATTGTAGAGGTTGGAAGAGTGTGAGAGACGCTATATTAAAATAAGAACCTTAAATGATGGTTTTCTGCTGTGTGTTTGATCTCCTGGTGAGTTTGTATTCTTTATGCATGATCAGTTGGTATTTGTGATTGGAGAATTTTCTTGTTGAATGGGTGCTATTTATGAAGTGCTTCACTTTTGAAGAAAAAAATGGTTTAGAGCAGATTAGAACCTTAAATTAGTTTTTGGTTTTTTTTACTAACTTTGCTTAATATGCCATTCTTTTCCTGGTTGGGTGCCCTTTTTTCTTTTTTTCCTAATTTCTCCCAACTTTCCGCTGTGTAATAAAACTTTGCAGATAGAAGGGTGCAATACTCATTTTTAACACCAAGTTTTTTGTCGCAG
Seq C2 exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.445
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTTCAGATGGAGCAGAAGC
R:
TTTAGCTTTCTTTCCACCGAAACA
Band lengths:
286-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]