RnoINT0021512 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86742181-86742737:-
Coord C1 exon
chr11:86742620-86742737
Coord A exon
chr11:86742353-86742619
Coord C2 exon
chr11:86742181-86742352
Length
267 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CAGGCCACCTCTTCCCACAGTCA
3' ss Score
6.39
Exon sequences
Seq C1 exon
GAACGTGAGCTCAGATGGTGCAGAGGCCCGGCGGCGACTTCGTGAGTGCGAAGGGCTGGTGGACGCTCTCTTACATGCCCTGCAGTCAGCTGTGGGCAGGAAAGACACAGATAATAAG
Seq A exon
GTGGGTGAGGCAGATGGGGACCAGCCTGCCCTCCAAGTTCTCAGAGCCCAAGGGTCACAGGGAGCACCCCAGAATAGCACAGATGAGACGTCATAACTTTCTAGAACACACGGTCCCTCATATGGCTCAGGGCCCCTCCTAGCAGTTCTCCCCACTGAGGCTGACAGTGCTGATGGTGTTAAAGCCACAGCTTTACACAAGGGTCTGGGAAGCTCAGCAGCCCCCTTGTCCAGTGTTGCTGCTCAACCAGGCCACCTCTTCCCACAG
Seq C2 exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAAGTTCCAGGGGCTGACAGGTACCAGGAGGTGGAGCCTGGGATCCCGGGCAGTGCTGCAACCTCCCAGCGTCGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.445
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGAGCTCAGATGGTGC
R:
CTTTCTTGCCACCAAAGCAGC
Band lengths:
284-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]