GgaINT1007255 @ galGal4
Intron Retention
Gene
ENSGALG00000005816 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:HGNC:973]
Coordinates
chr8:12762344-12762995:+
Coord C1 exon
chr8:12762344-12762672
Coord A exon
chr8:12762673-12762775
Coord C2 exon
chr8:12762776-12762995
Length
103 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGG
5' ss Score
4.5
3' ss Seq
CCGCTCTTCTTCGGGGCAAGTGT
3' ss Score
0.88
Exon sequences
Seq C1 exon
AATTCTAGCTTTGCAGTGCTAATCTGGGAGAAGAAATTACGGAAGCCAAGTTCTTAAAGCCGAGGAAAAGGGAGCTGCGGGAGGTCACCGTGCGTACGCGGGAGTGTGCCCCGGCGGCTCTCCGAGGGGCGGGGCGTCGTAAATCAGCGCCCCCGCTGCCCGTGCTGCTCACAGCGCCCGCGGTCGCCGCGCTGTCGGACTCGCGCACGGCCGGGCTCGGGCGGCGCCGCCGCGCAGCTCCCCAGGTGAGTGGCACCCGGAGTCGGGCTGTGCGCCGGGGTGAGGGCGGCGGTCACGGGAACCCAGGAACCAAGGTCCGCGGCCAGGGT
Seq A exon
GTAAGGCGCCGTCTGTGCTTGCCGACGGGTGAGCGATAAGGCGGTCAGAAGGCTGAGGTTGAGTCACCTTTACTTATCGCGATCCGCTCTTCTTCGGGGCAAG
Seq C2 exon
TGTTCGCTCCGGCTTCCATCGCGGAAGGGCGAAACCCTGGGCCCTTCGAGAACGCCCCGGGCAGTTACTCCAGTCGCCCCGGCCGCCCTGCGGGCCCGTAGGGAGCCCGGCCGGGAGCGGAGCTGCAGTCGGCCTCCGGGAAGCCGAGCCAGAACAAGAGTGATCGGACCGGCCGCTGCTGGGACGACGTTTTCCTTTGGGGCGGAGAACGACGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816:ENSGALT00000009337:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCAGGAACCAAGGTCC
R:
GTTCTCCGCCCCAAAGGAAAA
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]