HsaINT0017045 @ hg19
Intron Retention
Gene
ENSG00000137936 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:973]
Coordinates
chr1:94140170-94147385:-
Coord C1 exon
chr1:94147154-94147385
Coord A exon
chr1:94140498-94147153
Coord C2 exon
chr1:94140170-94140497
Length
6656 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTTTTCTTTCCCCCTTAGAGT
3' ss Score
11.77
Exon sequences
Seq C1 exon
GCCTGCTGCTGGCCGGGCGGGGGACGGGGCCGGGACCGGAGCCGGAGCTGCGGGGCGCACCGGCTAGACGCGCGCGGGATTCTCGGCGGGCACGCCCCGCGGACCATGAGCGTCCCCAGCTCCGGGAGCAGCCGCGGCGCGGGCGGTGCGAGGCCGGCCGCGCGGCGCCTTTGAGCCCCAGCCGGAGGTCCAGAGATCCTGAGAGCCCGAGCGCCCAGCGCCGCGCCGGGAG
Seq A exon
GTGAGTCTCCGCCGCGCGCCCAGCGTCCTCGGGGTGCTGTTCCTCCCGGGGCGCCTGGGCCTCCCCCACCCCGGTGAGGACACGCTAGGAAGTTTGTTGGACAAAGTTAGGCTCTGGGGAAAGTAGAGCCGGCGTTTGTTGGTCCCTACCCACCCCCGCCAGCGGATTTGGCGTTGGGGGCGGGGGTGACTGAAGTGGGGCTGGGGCTTGCGCTCTCCAGGCCCTCCGAGCGCGCTGGGACTCCCCGAGACGTGGCCCACGGCGGGGAGCGCTCAGCGATTGGCGGCCAGGCATCTTGCTCGGTGGCACTCGAGCGGCATCTTCCCGGGCGCTGGCCTCGCCCGACCCCCTGCCCGTCGGAGCTGCTCTGCCGGCCACCCCGCCCTGTCCCGCCCGTCCCCTCTTCGCAGAAGCCGGCCGGGGTCGGGCAGATGCGAGGGCCCAGAGCGCTCTGGTGGAAGCCCAAGGCTCCGAGGAGGCGAGTTTCTCCGGTAATCTCTTGGGAAGTTTGCAAAGAAAGCGAAGGAGCCTGCCCTGTAACTGTTGACAACATCTCCCTCCCTCTCTCCCTTTGTTGAGAAAGAATGAATAGTTGGTTGTGTTGCTCCCTCTGCGTCGCGGTGGGGAGAGGCGAGGGAAGGCAAAGGAAGGGAGGGACGGTGGGAAGGAGGTTCCGATAGATCGTACAGCCCAACTGTCCTTACCCACTTAGGCCGCTGAGGGCGCCGCCGCTTTAAAACGGTGTAATCAGGTGTAGACACTCGTCGAGGAGGAGGTTGAGCGGACTCCGAAGCATCTGGCAAGGCGGCGTGTTCCGTGGGGCGGCGGGTCGGGTCATGGTTGGGGTTAACTCGCTTGAAGCAAGGTGCAAAGGAGAAAAACCATTTTCCTAACCTCATATCTGTTTTCGCTTAAAGCTGTTAGCTGAGATGGAAAGTAGAGCCGTGCATTCAGATTGTTTTAAACCTTGACTTTATCTCCCAAGGCTACACAGACCTCCCCAAGGAAAGTACGCTGGCCGAGGGAAGGTCATTTTGGGAGCTGATAGCCTCCCTTGTGTTGCCTGGGACTGAGTTGAGATCCTGGAGGCTGGGAGAGGCCTCAGTGCTGGGGGTGGGGCCCAGCTCAACACAGGTCCAAGTGGGAAGGGGCTACCCGGGTAACAATGGGAAGCCCACAGGCAAAGCGCTTGTCTGCGGGCGTGCCAGGGGGTATTGAGGATAACGTAAAGACCTTGCCAAGCCAGGGGATCCCACACCACTCCAACTCCAACTTTCTCTAAAGTGCTGCTGAGAAGGCTGGCATTTCCAGGATGACTAACCAAGGTCTAAATCTCCTGTTCATATAGGCAGAACTGCTTGTCAAATGGATGCTAATCTTAAGAACCTTATCGGGTAAATCCTGTACTGTGTTGCTTGAAATACAATCCATGGAGGAATTATTCATACTTGAATCATTTGGCTAGACTTCATAAGTTTACTTCAAAAATAAAGAGATACTCTTAATTCCTAAACCCAAGCAAAACTTCATTTTAAGTGGATAAGCCAATTGAATATGTGTGGTTGTTTCATCTCCTCTCTCCATCTGACTCTCCAGAGAAGTTATAAAACTACAGATCCAAGTTGTAAATTCTCTGTCATGGGGCAGCCGAGACGGTTACATTTCCAGAGTTTAAAATATAATGAAAAGTTCTTAAAGCTCACATCAGATAACCATTATGAGTTAAACTTGAAAATATCCCGTTTCAGAAATAAAAGAGTAAAATCCAAACAAGTGGGCTGCTTATCTCTGCCTCAGCTTGCAAGATCATCAGTTTCTTTGAGACATCATTGTAAAGCAAGTGAGTTGGGCCTCAGTTCACAAACATTTCAAAGCCCAGCGACTGACCAGGCCCAGGAAGGCAGCACATGTGGTAAAGTTTGTCAGCCTCGCTCTTGTTCCTGATGTTCACATGAGTCTCAGATTTTCATATCAAGATGCAGAGTCTTTGACTTTTGTATAATATTTCAAAATCTGGCATTAGACTGAGTCAGGACATTGTGTTTGTTTTCCTGCACAGTAGAGAGAAGTCAGATGGCCAGAGTCTCACCTGGGCTTTTTTCTAAAGACTGCATGTAGGCTCACTTGGTTTGCCTGTACGTGTGTCTGTGTCTGTGTCCGTGTCCATGTCCTACTTGGCTTGGTGTCTTTGCATCTATTGTTCTAGGTTAAAACGTTTCCCTCCCCATCCTTCCCAGTTGCAGTCTTCATTTGTGAACTCTCAGAGTTACTTCCTTTGTGAACCCTCAGTATAACAGAGATACAGTGACTCTTATCTGACAAGATAGATAAGAGCAGCCCCTGTCCTGCTTAGAGGGGACCTGCTATTTACTAAGTGTTTGCAGTATTTCAAGAACTTTGTATACACAATCACTTTTAATCTTTACAACAATCTTATGAAATAGCTGTTAAGTCATTTTTTAAAATGAGAAACCGTCAGGTTGAGTAACTTGTCCCAGGCCATACAGCTGGTAAGTCAGTGGCAGAGTAGAGATTTGAACCTGTAGATATCTGCCTCCAAAGCCTAGGTTCTGAGTCATACCATTTTATTTTTAAAAAATCAAATGGTACATAAGAAGTATATAATGACTAGGGACATTGAGACAGAAATATTTCCAAGTGGAGAAAACATGGGAGCCAGAGGCTGGAGACTTGGGTTTAGTCTCCATCAGCTGTCATTCCAACCGCTTGTTCCTATGGCAAGACCTTTGCATTTGCCAGATCCCTTGCCTGGAACCCCCTTCAGACCTTTTTTTGACTGGCTCCTTCCCTTGCCTTTTTTCAGGTCTCATGTCATTGTTACCTTTTCAGAGAGGCCTTCCCAGTCCACCCTAATGTAAAGTAGCTCTCCACCCGCAACAGTCATCCTTTGTCAGTTCATCCTGTTTATATTCCTTAGCGTGCTTACAACTTGGATGTTAACTCATTTTCTTGTTTGTATAGGTTGGATTCCTCCATGAGAGCAGGAGCTTGTCTAATTTATTATATCCTTAGCCTTGGTACACCATAAGCCCTCAGAGAATATATATCAAATGAACATTTATTTCCCTTATCTAGAAAAATGGACTGGGAATTACCAGTACTTATGGTCATAATTTATTGTCTGCTTCCTCCAGAGTATTATTAGCTTCATGAGGACAGACCACTTCTGTCTTGTTTAATGCTGTCCCCAACACCTAGCATAGTGCCAGCCATAAAGGAGACCCTCCATGAATGTATGCATTGAAGAATCAATGTTTCTATTGATTGAATGATACTCCTTCATCATCATTGAATTCTGTTTTGCAGGTAAACAATTATGACTCAATTGCTGTGTACCAAAAAGACTCACTAATCCAGTGGTTCTCAATCCTGGCTTCACATTGGTCAATACTGGAGACTGATGCTAATGTCCCGCCCACAGAGATTCTCATTTTATTGTTCTGGGCTGAGGCTTGGGCATCAGGATTTTAAAAGCTTCCCAGAGGATTCTTATGTGTAGCCAGGTTGAGAACCAATGGTTTACGTTTTTATAGTAGAACTCATTCCTTGCTTTGGTCCTTATAGGCTTGAAGAAGCCATGGTAAGAGAGAGCAGGGGTATAATTCATGGGTATTGTATGATTCCTGACAGTTTAAGAGGTACTTCACAGCTGTTATCACATCTGATAATAACAAGTTAAGGGATCTACTCTCTGGTTTAAATATTGCCTTTATGTTGATGATTCCTAAAAATCTCCATCTGCCCTCACTTCTAATTGTGCATACCAGTATCTAACCTCCTCTTAGACCAAATTGTTTGCTGATACCTCACATGCAGCAGCTCCAGTGCTGTGCTTGGTTCCTGCAGGGGTGGGTCCCCTTCTGAAACTAGTTGGCATGTTACAGCATCGCACCACCTTCTGTGGCTGTAGGCTCCTTCCTTCCAGCCAGATGCCTCAAGCTCTGATGTCTCATCACTCTCTCCTTTCTCTCCCTTTACCCAGCTGCTGCCCCAGGTCAGAATTCTTCATTGTTCCTCCATGGGTTTCACCATCAGCCTCAGTAACCTCCCTGCCTCCTTTTTCTCTCCCCTCCAGAACAACCAGAGTCACCTACTTGGGTACAGACTGGGTTCGGTCCTTCCCTTCCAGATCTTCCCTAGCACTTCCAGTCAAGTCCAGACACCTTGGCAGGGCCTTCAAGACTCCATGGTCTGATGCTAACCTAAGTTGCTTCTGGGAAATGCTTCTCGGCTTCACTCGAGCCACAGCACACAACTGGGAATGTCCTGAGCCTGTGGGGTCACTTCCATGCCTTTATGCATCTGCCATCCTCCCGGGAGGCTTTTCCCCACATGTTAACTTTTCAAAATGCTTTGTCTCTATTGTTGCCCTCTCTGAGCCTTCTCAAGTCCTTTTGTCAAAATTAATTGTTCCTTTCAGCATAAGGGCCTCTATGAATTATTCTCTCTTAGAGTTCATAGTCAGGTATTGGGCCTTAGGCATCTTTGTTTCTCCAGGTGTCTTGTATGAAATAGGCACTTAAATGTTTGTTGAATTGAAGGTAAGAAGGGGAAGTATTAACATCCCTTGTTATTGGAGAATAAATTGAGGTGTTGGTAACTTGAAGGACATTTTAGAACACTTTAGGACAATCTTGAAGTCTAAGTAGATCTTGGGGAAGCAGAGAGGAAACAGGCTGCCAAAGGCAGTGGTGCTAGGGTGACTTTTGCCCATCATGCTATTGGAAATAGATTTGATCAACAGTGTGGCCCTATGCACATGAAGAAGTTCTGTAGGGTGCTGCAGGCCTCCCCACGAGGTTCTTTGAAATGACCCAGTCCTGTCTGTGAGAAGTCACAACTGTGGTGTGTATGTGTGTGTGTAGGGTGGAAGAATCCTAGTCGGTTTACGTCACTTGTGTTCAGGCGGTGGGGCTAGGGAGTTTGGTTTCCTTTCTAATAAGGATGGTTAGCATTGAGCAAGTGCTGACAGTGTGCCAGGTACTGGCCAGAGCTGGGAGGGGCTGCACAGGACTCTGTCCTATTGTTCTGCACCCACTGTGAGCAGACCTTCTGTGTGGTCCCAGTTGGACGTGGAGCAGGCAGCCCCCAGAATTACTGGATTTGACAATGAACCGAGGACAGAGTTAAGATTGTACACCTTCAGTAAAGATGCTCCTTCCATCTCACCCCCAGGACTTCTGTACTTTCCCCTATCTCATGTGGAAGCAGTGGAACGTGTGTGTTTTGTTGTACACACACATACAAACACATGCGTTTTCTTTACACACTCTAATGTCATTGTCTCGGCTCCACTTCTATCAGCTTGTGGAGGGTTGCATTCTTCTTGGTTGTCTTCAAACCACGTCCCAAGTCCGCAGTTCCTTTGTAGAACTGACTCTGCAGTAGTGCTATTAAGTGAGGATTTTCATGCAAAGCTCTTCCCTGAGTAATGCAGTGGAAAGGGTGGTTTGTGAGGAAAGAGGGCTGCTGGGTTGGAGAACAGACTAAGGGGCAGCTCTCCTCACCAGCCCGTGGGAAGGGCTGTATGTTGGGCTTGGCCACCCTGCAGTGCTGTCCAGACCAGAGTCTGATATCATGACTAGTATAAGACAGATCCTGGAGCCTCTATCTCCAGGGGCCAGCCTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCCTATTTCTTTTCCTCTGTGTGTTGGCCTTAAAAATGTATTATATAATTTGTCTTAGGCCAAAACCATAGTTTGCTTTGGAGCTGGAGGCACTGACTCTGCTCAGGGTAAATGCTTCTACTCATGGTCCTAGATAGGAGAGAGTGTCGGGGCTACTTGCTGCACACAGCCTGACGTGCCATTCTCCTTTCCCTTTCCATGCTTCCTTTGCCCCCCACCATTTTTTTTCTTTTCTTCTTCCCTTCTCCTGTCTCTTCTTCCCCGACTGTACAGGCACCCATGGGCATTACCTAACCCTGCTGGTGGCAGGCAGATCCTGACCCCTCTGTGGGGGCCATGTACATGCAGCCCCCACCCCAGTGGCTTTCCTCTGCAGCTGAGCCTGCTGGTGTATGGCAGAATGGCCCACCTCCTGACCCTGACCCTAGCCCGTGTTCACTAATTAGAGTGCATTGATTTATTTATAAACACTGGGTCTTTGCCAGAAAAATTCTGTCCCATCCTGTGTAGCACAACTGAGGACTGGTCTGGCACTGAAGACAATTCTAGCAGCTAAAGAATTTCAATAATCCCTGCCTGTTCTTATCATTTACAGGGCAGTGAAAATAATGTGAGCTAATTATCTAACAGTTTATAATATTTTCTTTCGTACATTTATTACTGCAACTATGAGTCCTCTCTTAATCATCTTTTTTTGCTGGTTGTGCATGGCTTATATGCCTCTAACAACTCTGAAAGTGTTTGCCCTCTTGGTTTTGCTGCCAACCCAGGACAATTCCTATGTAGGATCATTTCAGGAGGAAGATAAGTAAACTTCCCATTCTTATTAGACTCCACTAGTGATGCCATTAAATGTTGATCTGTTAATGGTCTGTGAATATTTCATTTTATGTGGCATATTTCCATTTCCTTTTGTAAGTAGGAAGTCAGTTCTTGTGACTCTCATAGATTTATACCTTCACTCTTTTCTTTCCCCCTTAG
Seq C2 exon
AGTTGAGAATTATGGCTGCAGGAAAATTTGCAAGCCTTCCCAGAAACATGCCGGTGAATCACCAGTTCCCCCTGGCCTCATCCATGGACCTTCTGAGCAGCAGGTCCCCTCTCGCTGAGCATCGCCCAGATGCCTATCAAGATGTGTCTATACATGGCACCCTTCCACGGAAGAAAAAAGGTCCTCCTCCCATAAGGTCCTGTGATGACTTCAGTCACATGGGCACCCTCCCCCACTCCAAATCCCCACGGCAGAACTCGCCTGTGACCCAGGATGGCATCCAGGAGAGCCCATGGCAGGACCGGCACGGCGAAACCTTCACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137936-BCAR3:NM_003567:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.953
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)