MmuINT0024341 @ mm10
Intron Retention
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122419778-122426754:+
Coord C1 exon
chr3:122419778-122420183
Coord A exon
chr3:122420184-122426444
Coord C2 exon
chr3:122426445-122426754
Length
6261 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTCTCTTTTCCCTCCTCAGAGT
3' ss Score
11.82
Exon sequences
Seq C1 exon
CAGTAAGGAAGAGGTTGAGCTACACTTGAAGTCTAGCTTCTCGGGGGAAGATAAGGGGGAGTCAAAACTCTCAAATCCGGGCGGAGGAGAGCCAGACGAGGTCACCGAATGTAAAAGTCGCCGGGGTTCGGCTCAGCCCGGCGAATCGGCTGGGCGGGGTGGGGCCGCGAAGCCGCAAATCACCAGTTGAGGGCCAGAGAGCGCGCTGCCGGCTCAGAGCTGAGCCTGCAGCCGCCCGGCCAGGCAGCAGCCGGAGCGGGACAGCCGTGCACACCCGCCAGCCGCACCAGCCTCTTGGCGGACGCCCGCGGACCATGAGCCGCCCGAGCTCCGAGAGCAGCTGCGGTGAGGTGAGAGCAGCCCGGCGCTGAACCGCAATCCCGGACTCCGAACGCGGCGCGGGGAG
Seq A exon
GTGAGTGTGTCCCGTGCGTTCCTGTTCAGCCTCCTGAGCTCCCTCGGTCGGACTGAAACAGGACTGAGAAGTTCTTTAGAGTAAAGTTAGGCATGGGGAAGAGCGCAACCCCCGTCTGTTTGTACCCCCGAGCCCCCGCAAACTAGACATGGGAGTGGGAGTGGGGGTGACCAAAGTGTGTGTGGCGGGGGAGGGAGGGTGAGACTTGTGCCCTCGGGGGTCCTCGGATCCCGGGACTCTCGGGAGTGGAGCGTGGTGATGTGCCTCGAGCATCCCCATCTACTCTTGGGCTCCGGGGCGGAATCTTCCCGGGTGCTGGTTTCTGGACCCCTCCGAACCCTCCTGCTAGTCCAGTTCGGTTTTGCCCAAGGCCGCTCTAAGCTGGGTAGACGAGCTGGCCCAGACGCCTCTGCTGGAAGCCCGAGGCTTTCCTCCACTAATCTCTTGGGAAGTTTGCAAAGAAAGTGAAGGAGCCTGCCCAGTAACTGTTGACAACATCTCCCTCCCCTCGCCTTCCCTTTGTTGAGAAAGAATGAATAGTTGGTTGTGTGCTTCCCCCTGAGTCGGAGAGGGGAAAGCAAAAGGAGGGAGGGACGGGTCGCAGCCCATCTTCCTTTACTCGCTTAGCCTGTGGCCACTTAAAAACTTTAATCAGGTGTAGACTCTTTTTGAAGGGCAGGTGGCAAAGGCAGCGAGCCGGTGATGTGGGGCAGCGCGTCACAGGACTAAGGTTTAACGGTTGTTTGAGGCAAGGTGAAAGGGGGAGTAGCCCGAGTCTAGTTTTTTTTTTTTTTTTCAGTTTTTGTTTTTGTGTTTTGTTTTTCCCTACAGCAGTTAGGGATGGAAAGTAGAGCCCGGAGTTCAGAGAGTCTTTTAAACCTTGACTCTTATCTCCCAAGGTTCCACAGACCTCTCTATGGCAAGTACGTTGGCCCAGGGAAGGTCAGTTTGGAAGCTGATTATCTAATTCTGTGTGGTCCCCCCGCTTCCCCGGGGGGAGGCGAGATCCTGAAGGGGGCTTCGTCACTCTTCGGGAGGCCCACTGGCTAAGCCGTTTGCCCACCCGCGAGTGTGCCAGGAAGCCTCCCCAGTATAAAGAAAACAGTTTACCACGCCAAACACCAACTCACTCACAAGTGCTGTTCAAAAGATCTCAGTTCCTATTGATAAAGGACTGCTTTGTCAGATGGGTACTACTCTTAAGAACCTTACCCGGGCAATCCTTCACTTTATTGCTTGAAATACAATCCGTGGAAGAATTATTCATACTTCAATCGGTTGGCTAGACTTCATAAGGTTACTTCAAAAGGACACCCTAGGTCCCTAAAGCCAAGCACAAGTTCTAAGTGGATAAGCCAATTTTATCTGTGGAATAGTTTCCTCTGCCCTCACTGTCTGATTTTGCAAAGAAGATGAGAGAAGTATAGGTTTGAATTGCAAATTCTCTGTCATGGCCTAGGTGAGGGCAGCTGGGGTAGTGGCATTTCCAGTTTGAAATATACAAGTTCTTAAGGCCCTTCCTTAGATTACCATGTGTGAATGTAACTTGAAAATATCCCATTTCAGAAAACAGAGACAACTCGAAGCAAGTGGGGCAGTCTACCTCCGCCTCCGCTTGCAAGGTCGTCAGGTTTTGTAGTATTGTTTTGGTCATCTTTGTAGAACAAGTGAGTTGGACAGAGGTCATAAACTTTTCAAATGCTCAGCGGTTAACTAGGAAGGCAGGCAGGCGGCAAGGCTGCTGGAGTTTGTCATGAGGTTCACTCACACTCTCCGAGTTCCAGACTCTCAAACTTTCCTATCACTGGATCGTCTGACCTTTGTATCTATTTCAGGATCTGACAGTAGAGGAGGATGGTCAAAGTTTTCACTGGTGTTTGTTTGAAAGCATGGCGGTTCACTTGGAGTCTATGCCCTTTTGTGTCTTTGTCCTCTGCGCTTGGTGTGTTTATATCTGTTGTAGGTTGAAACATCTCCCTCCTCAGCCTCCCTAGCTTCCAAGGTTCTTTTTTTTATGTGAACTCCCACTTCAGTGGGGACACAGTAAACAATCTAGGCAGCCTTGGCTCCTGCACGGTTGGAGGAGATACTATTGCTTGCTGTGCAAGCAAGTCATGAACTTCATGCCTATGATCACATTTAATTTCCACAACAATCCATGAAGACAGGATCGTTGACACCTTTCACGAATGACCCACTGACTGTCAGAGTGTGCTGTGACGTGTCCCAGACCTCATAGCTACCACGCCAGAGGCAGGGTAGATCTTGGAAGCAGTAAATACTGGCTCCAGGACCCTGATTCTGAGTCATACTTTTTTTTTTTCGGATGACCAACTGGTACACAGAAGTGTGTAGGGGCAAGCGGCCTTGGCACAGAAGCATCTGCAAGAGAAGACTAAAGCTCTGGGCAGTCGCTCTAGCCACTCATTCCCAGGCTGGTTGCACTGGAATCTTTCCCCTGGCTGGAGCTGCCTTCAGATCTTCCTGAGCCTGATCCCTTATCTTTTTTCCCCTTAGATCTCGTGTCCTTGTAAGCGAAAGACCCTCCCAGACCAGCGTATCATCAAAAAGTTATCTTTTTCTCCAGCCAGCATCTTTATTTATCATGTCACTCTTGTTCTGTTTTGGATTCTTTGGGGTACTTACAACTTGGGTGTTGCCTGGTTTATTGTCGTGTTTATGTGGTTTTGTTGGACTCGGTACGCCTCAGTTTTAGGCTTCCTGAGAGCAGGGCCCTATGATAGCTCCATTTTTAGTGCCCTGTAAGCCTTCACAGAAAGTCAAGTGAATGAACACAAGTCCTCTGAACTGGGGAAATGAAATTGTACTACCAGCATTAGAGTAAATGCTGAGTAAAAAGAGTATTTTTAGAAAATAATTATTTTTTAACAATTTTATGTGCATAATGGTGTTTGGCCTGCATATATGTCTGTATGAAGGTGTCAGATCTCCTGGAACTGGAGTTGCAGACAGTCATGAGCTGCCTTGTAGGTGTTGGGATTTGAATCTAGGTCTTCTGGAAGAGTGACTAGTGCTCTTAATTACTGAGCCATCCCTCCAATCCCCAACATTCATTCTTACTGTAAGCTTCCTCTATAAAAGATTTAACCTTGTAAGGTCTAGGCCACCTCATATTGTTTGGTTTTGTTTTTATTTTGAAGACCTAGTACAGTGTCCACCATATTTGAGGCCTTGCATCATTTGATTCTGTTACCCAGGTAGACAATTTAAGTGAAAGATGCTTGCTACCCAAGAGAATCCTCCAATGCTGTCTTCTCAATCCTGGGTCAAGACTGGGCAGTGCCATAGAGCTTTAAAAATGCTGATGCGGTGTCTTCCCCACAGAGATTCCGATTTTAGCATCTGGGCTGTGGTTGAGCCTCACAGTAAATAATCCGTATAGGATTTTTACACACAACCTGGCTGAGCCATGGGTTTCTGTGTTTTCAGAACTTCTTCTCTACTTTGGTCCCGACAGGCTTGAGGCAGCCATGGTGAGAGGTAGGGATGCAGTCCATGTTCTGTTGGTGGTTCCTGGTAGTGTGGGCGATACTTTCACATCCACTATCATAGGCGGTACTACTAAGTGCTCTGACCTATGCCCTCCATGTTGGTGACTCCTTCTGGAACCACGTCTCACATAACGGACTCTAACCTCTGTCTACACTGAACTGCCCCCTGGTACCTCACACACAGTTCCACTTGGTGAGCTTATCTTCCTCCTGCATGGATCCCTTCTGAAACCTCTTGTGCATAGTAGCATCATGCTGTCTTCCCGTGGCCATGGCTTCCTTCCTTCCTTTCAACTATGGACCTTGAGCCTCTAATGACTCTAAACTCTGTCCTGTCCTTTTTTTCGGCCACTTCCTGAGTTCGAAGTTCTTCATTGTTCTTCATGGTTTACTGCCATCTGTCCCAGTGATGCCCCTGGCTTCCTTTTCCAGAATTACCACAGCCACCATCAATATACAGACCAGATCCCTCTCATATAGTAGACCTTCCCTGGCACTCACCAGACAAGTCCAGACACTTTGACAGAGCCTTTAAGACTCCTTATCCTATGTTGTAGGTCTTTCAGGAAACATTTCTCAACTTCTCAAGCCACTAGCCATGGCCTGAAATGTGCTTAGAGTGTGGGGATGCTTCCATACCATCATGGCTCTGGTGTTACAGTGTCCTCTTAGAGGGCTTTTCCTGACACATTCCATATGTATTTGTCTCTTGCCTTCTCCCCAATTTCTAGGAGTACTTCTGTCAAAAGTAACTGTTGTTCCTTCCAACATAGGGGTTGGTTGCTGCTTATGAGTTCTAGGTTGGAGCTCTCTACATCTTATAGACAGTGGTACTTAAATGTTTGTCAAATTAAAAATGGGAATAAGAAGACTTTAACAGACTTTGTTTTCAGAGAATAAGTTGAGACTCGGGGTACACTAGAGGGCTTTTTAGAATCTTAATGAGCACAATCTCATACTCAACTCCAGCTCAGACTTGGATGTGCAGAGAAGACGTTGTCACTTTTGCTCCCTGTGGCTCTTGGAAATAGACTTGATCAACAGCGTGTCTTTTACACATGAAGATGTCTTGCATGGTACTGATGGCATATGCTGTCTCACTCCCTACCAGTTTGAGATGGCGCAGGCTTGTCAATGAGGAAGGAGGGCGATGATAGCTTGACCAGAGGCAGTTCACAGCTGTGTGGATGGCTGGTGGGTGGGAGTAGGGTTGGGGACTGCTAGTTGGTCAGGTAGAAGGCTAGAAAATTTTGATTTTTTTTTTAATAACAATGATTAACATTGATTAAGTAAGTGCTGACAGAGTGCCAGGAACTGGCCAGGACGGGGAGGGCCCCTCCCCTCCCAGGACTCACCACCCTGTTTTTCTATATTCCTTGTGAGCCAAGCTTTCTATGTAGTCTCACGTACAGCAGACAAGCTTCTGAATTATCAAGGCTGGCAAAGAACAGAGGACAGGGTTAGGACTTTATTCCTAAGTATATTCTACCCAGTTCTCAGAACTCGCACATGTCTCTCTGATGCGTGTAGTAGTAGATTTGTGTGGCTTCGCATACAAAGTGTGTTTCCCTTGCCAACTCTTTGTCCCACCACCACCTCCGGGAGCTCACAGGGTGGTGGTTAAGCCAAGTCCACAATGCCTATGTAGAGGCAGCTCTGCAGGGGTGCTATCCCTTCAAGTTCCTTCCCCCCCCCCCCCCCCACCCCACCATTGCAATGGAAAGGCTGGTGAGTTGAGAAATGGACACTGTGAGTTTGAGAACAGGCTGTGGACTTCAGCTGTCCCATGGTGATGTGCAGACCCTAGTTGGATGTCGTAGGCAATGTAGGGCATCTTCTGGGACTTCAGGTATCTAGAGAATTGTTACTTTTTTTTTTTTTTTAACTAGAGCTCCTGTTTGATGTGTATGTTGGCCTTGATAGGTCATATATAGTTTGACTTGGGTCAAATTCTAGTTTAGTTTGGAGCTTAAGCATTGTTTGGGGCAAATGACTGCCAGCCACCCCTGGGAGCCACAGTTGTTGGGGCTGCTGCTGCTACCTCCCTGGCCATTGTCCTCTTTTGCTGTGTTCTTACTCTTTCCCTCTAACCTCTTTCTTCTTCCCTGACTTCACATGTACCTGTGGGCATTGCTTACCCCTGCTGCTGGCTGGCAGGCTCCAGTCTCCTCTTGGAAATAGTCTACAGGGTGGTACCACCTGATGGCTTCCTGGTGGAACTGAGCCCGCTGATGCATGGAAGAGAGGGTTACCCCTGACCCTTGACCCTTGACCCTTGGTTAATTAGAGTACAGCGATTTATTTATAAGCTTCAAGCCTTTGTCAGAAAGGCTGCCCTATCATTGTGTCTAGCACAATTTTGGTCTGGCACTGCAGAAATTCCAGCAGCTAAAGAATTCCAATCATCTCTGACCATTTCATCATTTGCTGGGTGATGGATCGCTGTAGCAATCATCCGACAATTTACAGTATTTTTGTCCTCCCCTTCCATAATGCTAAAATGGCTCCCATGCCTCTAACAACCTGGGATTGTGTTCACCTGTTTGGATTTGCTACCCATCCAGCTGAATTTCTCTACAGAATCCTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTCTCCACTCATACGAGGTTCCACTAGTAATGCCTTTAGACAGTATTTACCTTTTGATATCTTGCAACTGTTTCCAGTTTCTTATATCTGTCTTACCTTTGTCCTTCTGTCTCTTTTCCCTCCTCAG
Seq C2 exon
AGTTAAGAATCATGGCTGCGGGAAAGTTTGCAAGCCTTCCCAGAAACATGCCTGTGAATCACCAGTTCCCCTTGGCCTCGTCCATGGACCTCCTGAGCAGCAAGTCCCCTCTTGCTGAGCGTCGCACAGATGCCTATCAAGACGTGTCTATACATGGCACTCTTCCACGGAAGAAAAAGGGCCCTCCTTCCATACGGTCCTGTGACAATGCTGGCCACTCCAAATCCCCACGACAGAGCTCACCTCTGACCCAGGACATCATCCAGGAAAACCCACTGCAAGACCGGAAAGGGGAAAACTTCATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121:ENSMUST00000029766:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.730
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types