BtaINT0025274 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:49942256-49951939:+
Coord C1 exon
chr3:49942256-49942401
Coord A exon
chr3:49942402-49951611
Coord C2 exon
chr3:49951612-49951939
Length
9210 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CTCTCTTCTTTTCCCCTTAGACT
3' ss Score
11.48
Exon sequences
Seq C1 exon
AATAAGGAAGGAGAAGGCAATGGCAACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGGCAGAGGAGCCTGGCAGGCTACAGTCCACGGGATGGCAAGAGTCGGACACGACTTAGTGACTAAACCACCACCACCACCAAG
Seq A exon
GTAGAGGTCAAGATTCTTCTTTTTTTCTCCATGTGGCTTTTCAGTTGATCAAGCACCATTTACTGAAAAGACCACCCTTTCCTCAGTGCATCACATCAGCATCTTCTATGTAAATCAAGTGACCTTATAATGTAGATCTGTTTATGGACTCGATTCTATTGTCTATTCTTGCTGCTGCTGCTAAGTCGCTTCAGTGGTGTCCGACTGTGCGACCCCAAAGATGGCAGCCCACCAAGCTCCGCCTTCCCTGGGATTCTTCAGGCAAAAACGCTGGAGTGGGTTGCCATTTCCTTCTCCAATGCAGGAAAGTGAAAAGTGAAAGTGAAGTCTTCGTGACCCATGGACTGCAGTCTACCAGGCTCCTCCGTCCACGGGATTTCAAGAGTAGTGGAGTGGGGTGCCATTGCCTTCCCCGTCTATCCTTGCTACCAATTACTCTTTCTATAGCTTTATAACAGGTCTTGATAACTGGTAGTCCTCCACTAGGCTCTAATTTTTTACCCTCCCAAGCCATCTAATACCAGAGTGCAGCTTCCACTTCCCACTTGGCTGTTAGTATCTTCAGATGGGTGTAATTGATTTGCTTGTTCCAAGGGCTTGGTCATTTGTGGTTACCTGGGTCTTTATCCCATCAAAACCCCTTTAAACAAAGCCAGCCAGGTGTCGGCAGACAAGCAAATCAGATCTGTTGGGTAATTAAATTACGCGGGGAGGGGAGAGGTGGATAAAGTGAGGTTGTCTCCCCTGGGGGTAGAGTGACAAGGTGATCGATCTACATACACCTGAGGACTGGCTTCTCAGGAGGTACGAGGAGAGCCAAACTAAAATCCGGGTAGAGGAGGACTACGCGAGGTCAGCGCATGTAAATGTCGCGGGGGGTTCCGCAAGGCTGTGCGAATAGGCTCGCTGGGGTGGGGCCGAGAAGCCGCAAATCACCAGTTGAGGGCCGAGTGCGCGTCGCCGGCTCAGAGGCGCGCCTGCTGCTGCCTGGGCCCGGGCGGGGGCCGGGGAGGGAACCGGAGCCCCAGCCGCCCGGCACACAGGGTAGACGCGCGCCGGCTTCCCGGTGGGAGCGCTCCACCGATTATGAGCCGCTCCTGCTCCGGGAACAGCCGTGGCGCGGGGCAGACCGTGCGGCTCCTCTGAGACCCAGCCCGAGAACCCGGGCCCCGCGCTGGGAGGTGAGTCTCCGCCGCGTGTCCCGCGGGGGTGCGGCTTCTCCCGGGGCGCTTCGGCTTCCCCCTTCCCTTGGAGGACGGACTGGGAACTTTGTTGGCGAAAGTTAGGCTTTGGGGAAAGTAGAGCCAGCGACCCCCTACCGCTCCCCCAGCCGAGTTGGCGACTGGGGGCTGGAGTGGCAGAACTGGGGACGGGGTTGCGCCCGTAAGGGGCCTCTGAACCGGGTGGGATTCCCCACACGGGGCCTGCGGTGGGAGGCGACGTGCCGCGAGCATCTCTGCTCTTTGCGTCTTCCCGGGTGCTGGCTTCTTCGACCCCCTGAGCGTCCGGCCGCGCCTCCCGGTCCCCTCCCTCCGGTCCCCTCCCTCCGGCCGCAGAAGCCGGAGCCGGTCGCGGGATGCGAGGGCCAGGGAGGTGGGGGTAGGGGCTGCTCCGCTGGAAGCCCTGGGCTTGGAGGAGGCGAGGTTCTCCACTAATCTCTTGGAAAGTCTGCAAAGCAGGCGAAGGCGCCCGCCCCGTAACTGTTGACAACAGCTCCCTCCCTCTCTCCCTTTGTTGAAAAAGAATGAATAGTTGGTTGTGTTGCTCCCTCTTCGTCGGAGAAGGGAGGGAAGGGGAGGTGAAGGCAGGGAAAGGAGGGACGGTGGGCGCAACGCAAAGTGGGTTCCGGTCTCAGCCGGTCTTTCCTTACCCGCTAAGGCTGCCTCCACCTTAAAAGTTTGATCAGGTGTACACAGTCGTGGGAAGTTCAGTGGGCTCCAAAGCAGCTGTCGAGGCGGTGTGTTTCGTGGAGGAACCCAGAGGGTCGTGCCTAGGCTTGGGTGGCGGTGATGGAAAACTGGTTTTGGTTTTAACTCGCTTGAAGCAGGGTGAGGAGGTAAAAGATTATTCTCCTAACCTCGTTTATCTTTCACCTGAAGCTATTAGCTGAGATAGAAAGTAGAGCCGTGCGTTCAGCCATGCATTTTAAACCTTGACTCTTATCTACCAAGGCTACACAGATCTTTCCAAGGAAGACACATTGGCGGAGGGAAGGTCAGTTTGAGAACGGATAATCTCCCTGCTTGTTGCCAAGGAGTGAAACGAGATCCGGGAGGAAGGGGGAGACGTCGGTTCAAAAAGTCACAAGTGGGAAGGGGCTGCTCCGTTAATACCGGGAAAGCCACAGGCCAAGCAGTTATACGTGAGTGTACAAGGGGACATATGAAATGTAGCTGTAAACAACTTGCCACACTAACGGCTCTCTCACGCCCCGACTCCAACTTTCCCTGAGAAGCCTGACATTTCCAGAATGACTAACAGGAGATCTCAATCTCCTATTCATATAGAAAGGACTGCTTGTCGAATGGATGCTAATCTTAAGACCTTTATCATGTAGATCCTGTGCTGTGTTGCTTGCAATTCAATCCATGGAAGAATTATTCATACTTCAATCATTTGGCTAGACTTCATAATGTACTTCAAAATAAAGGGATGGATACTCAATTCCTACACCCAAGCAGAGCTTCATTCTGAGTGGATAAGCCAGCTTTATATGTGTGGTTTGCCATCTCCTCTTCCTATCTGCCTCTGCAGAGAAGATATACCGCTACAGATCTGGATTGTAACTTCTCTGTTGTGGTCATAACAGGGCAGCGGAGGGGGTTACATTTCCAGAGTTTAAAATACAACAGAAAGCTCCTAAAGCCCACATCCCATGACCGTCTGTGAATTTAACTTGAAAATATCTCATTTCAGAAGTAAGATTGAAAAATACAAACAAATAGACTGCTTATCTCTGCCTCAACTTGCGTGCGATCGTCAGTTTCCTTGAGACTATAAAGGAAGGGAGTCAAGCCTGTTGTTCACAAGCATTTTCGAGCATAGCCGCTGACCAGGGTCAAGAAGGCAGCACATAGGTTGGGAGTATGTCAGGCTCTCTCTCATCTCTACTGAGATTTCAGCTCTTTGAACGTACACGTGGGTCTCATATTTTCCTATCAAGATGTAGAGTCTTTGACCTTTGTGTATATTTCAAGATCTGGCTTTAGACAGAGTCAGGACGCTGTGTCTGATTACCTGCACAGGTGAAGTCAGATGGCCAAAGTCTCACCTGGGCTTTTATTTTAAAGACTGAATGTGGGCTCACTTCATGTGCTTGTGTATCTGTGCCCTTGTCATACTTGATTGGGTGTCATTACATCTTTTGTTCTTGGTTTAAACATCTCCCTCTTCATCCTTCCTGGCTGCAGTCTTCTCCAGAAACAGTGACTTCGTTTGTGAGCTCTCACTGTGATGGGGATGCAATGACAAGCAAGACAGACATGGTCTCTGCCCTGCTTAGGGAGACATGGTATTTTTGGAATGCTTGCTGTATGTCAAGGGCTTTCCATACACAATTGCATTTACTTTTCACAACAACTCCATGAAGTAGATGTTGTTAACCCATTTTTACAAGTGAGAAACTGTCAGAGAGGTTGTCACTTGTCCCAGGCCACACAGTAAGTCAGTGGCAGAGTAGGGATTTGAACCTGTGAGTGTCTTACTTCAAAGCCTAGGTTCTGAGTCACACCATGTTTGATTTTCAAAAATTAAATAGTACATAATGGCTAGGAACATCAAGACAGAAGCATCTCCAAGTGGAGAAAACTTGGGAGCCAGAAACTGGAGACTTGAATTTAGTCTCCACCATGCTCTTCCAACCCATGTGTTCCCATCTCAAGACCCTCCCATTTGCAGAATCCCCTGCCTGGAACTGAAGGGAGTTGAATCTTTTCTTGACTGGTTCCTTCTCTCTTTTCAGGTCTCATGTCATGGTTCCCTCTTCAGAGAGCTCTTCTCAGAACACCCTTTCATGTTCTTTAGGGCAGTTATGACTGGGATATTCCCTAATTTGTTTTTTTTTAATCTGTGTTGATTGGACTTCCCCATCGCAGTGTAGGCTCCATGAGAAGGAGGAGCTTATCTATTCTGTTATAGCCTCAGCTCTGGTACATTGTAAACCCTCAGAGAATATATATTGAGTGAATGAACATGTATTTTCCTTATCTGGAAAAGGGAAGGGGCTTGATCCTCTGAGATCCCATCTACATATCACGTGCTGAGATTCTGCTAGTGGTCAGCTGTGGTAGGTGGCTTCTCTGGCAGAATGGAAAGTACGTACCTTGAACCTAGATTCCATCACTTCACCTCTGGATTTCCCCCAGGTTCCTGGAGTCTGGAAAAAATAAAAATAAATAAAAAGTAGGAAACAGAGCAACCCACAGACTGCAAATGAGTTTCTTCCACCTGTAGGTCTCCCTTCCACTCCCCACCCCACTTTAGTTTGTTGCTGCTGTTTGTTTTTATAAAGTTGGGTCTCTGGCCAGGGCACACCTCCCTCACCGTTGGATTGACTCAAGCTTGACATTGGACCCAGGCTGGAACCAGTCTTTTGCAGTGACTAGTCACGGGATGAGGCTATATTTTAATGGGGAAGAGTCCCAAGTTAGAGGCAGCAGGTTGTTGAGGAGAGCCTGGCCTGTGTATTTCCAATTTATCTGCAGCTGAGAAATTTAACTGTAACACGGGAAACTTCAACTAGGATGATCTTCATCCTCCCATTATTAAACTCTGCTTCACAGCCTTCGGGTCAGCACCCCTTCCTCAGGGAAGCCTTTCCTGGCTGCTAGATTCATCTAGACCCCAGTTTCCACTCTGCGTGCCCCCGTAGCCTGGGGACTCACCAATACGTAAAGTCATTACTTATTGTCTGCTTCCCCCATAGGATAGGAACCTCTGGAGGACAGCTGTTTGACACCATCCCCAACACCCACACAGTGCCCACCACATAGGAGGCCCTTGTTAGATGTGTGTTGGATAGAAGAATTAGTGGATGCTCCTGTTGACTGACTGTTCCTCTTTGTCATTCTTTTCTGTTACCCAGAAAGTAATCTGAGTGTCAGTTGTTCTGTACCAAAGAAACCCACTTACCTGGTGGTTCTCAAACCTGGCTCCACATTGAACAATATTGCAAGGGTTTTAAGACTGATGCCAGGGTCCTATTCACCGAGATTGTGACTTGATTGGTTTGGTTCATGGCTTGGGTGTCAGAATTTTCGAAGCTTCTCCGAGGACTCTTAATGTGCATCCAGGTTGAGGGCCTCTGCTTTTCCAGAACTCATTCCTGGCGTTGGCCCTTATAGGTTTGAAGCAGTCCAGGTGAGAGAGGGCAGGGATATAATTCATGGAATATTGCATGGTTCCTGACAGTTTAAGAGGTACTTTCACATCTGTTATCACATCTGATAATAACAAGCTGACGGATCTACTCTCTGGTTTAAATACTCCCTTTATGTTGATGACTCTTAAAAATCTACATTCTGTACTGGCCTCTAACTGAACATACGAGTATCTAGACTGCAAGACAGAACTGTCCTGGTACCTCACACTCAACAGCGCCAGTGGTGAGCTTGTTACCTGCCGTCCTGAGAGGGTCACCCCTTGTGCTACTGAGTGATACAGCACAGCACCATCCTCCCATGGCTGTGGCCTCTTTCATCCCATACAAGAGGCCTTGAGCTCTTAGCCCCTCGCTCTGCCCTTCCTTTCCCTTCCCGTGGCCACTGTCCCATGTCGGAGTCCATCATTCCTTGGTGGCTTGTTGCTGGTGTCTGACTGACCTCCCCTTCTGTCCCCTCCAGAATCACCAGAGCTCCCTACCCAGGCACAGACTGGATTCCATCCCTCTCCTCCTGAGTTTCCCTAGCACTGACAGTCAAGTTCAAACACCTCAACACACCCTTTAAGACTTTGTGATCTGGTCCTAAGCTGTGCTTCTTCCAGGAAGTACTTCTCAGCTTCACTCGAGCTGCTCTGCCCAACTTAGGTTCCTGAGCCTGTGCAGGTACTTCCCGCCTTTATGCATCTGCTGTTACCACATCATCTTAGAAGGCTTTTCCCTACAGTTTCCAGCCTTTCAAAATCTTCATCTCCAGTGATGCCCTCTCTGAGATCCTCCTTGAGCCCTTTTATCAAAATTAATTGTTCTTCCCTCCAGCATCTTAAGGGTCCCATCAATGAGTTACATTACAGTTGACCTTGAACAGCACAGGTTTGAACTGCATTTGTCATTTTGTTGTTGTTTAGTCCTTCAGTCGTGTCTGACTCTTTGCAACCCTGTGAACTGTAGCCCACCAGGCTCCTTGGGATTTCCCAGGCAAGAATACTGGAATGGGTTGCCATTTCCTTCTCCAGGGTATCTTCCTGACCCGGGGATCAAACCAATCTCCTGCATTGCAGGTGGATTCTTTAGCCACTGAGCCACCCAGAGTGGGGGTGGGGGTGGCACGTAGAATTGCACAGGTGCACTTATACACAGATATTTTTCAGTAGTAAATACTACAGTCCATGGTCAGTTGAATTTGTAGATGTGGGGGAACTGTGGATACAGAGGGCTGTCTATAAATTACATGCAGATGAACCCTGAGTTGTTCAAATGTCAACTGTATTCTCTTTGAATTCATAGTTAGGGATTGAGGTTTATGCTCTTTGTTTCTCTGAGTATCTTATCTGGAGTGGGCACTTAAATGTTTGTTGAGTTGGAAGTAGGAAAAGCAGGTGTTAACATCCCTCGAGAATACACTGAGGTGTGGATAACTTGCCGAAGGGCATTCTAAAGCACTTTGGCTCAGACTTGAAATAGATAGATCTTGGATAAGCAGAGAGGAAACAGGCTGCTGGAGACGCTGGAGCCAGTGTAACTCTTGTCTGTCATCCTAGCCTGGAGATAGACGTGATCAACACTAGGGGCCTTTGCAAGCGGAGAGATTCTGTGCGATGGGGGTGGGGCTTTGGGTCTCCCCACCAGGTTCTTGGGACTGCTCCAAGCCTGTGGAGAAGAAAGGTGCTGATAACTCGGGCAGGTGAGAGTTCATGGCTGTGAGTGTGTATGGGTGGGATGAGGGACTCCTAGTCGGCTTACGTCATCTGTGTTCAGGAGAGGGCTGAGGAGTTTCTTTTTTAATAATGATGATCAACATGGAACAAGTGCTGACAGTGTGCCAGGTACTGGCCAGACCCGGGAGGGGCCCCCGTGGGGACTGACAGTCCGTTGTCTGCACCCACCGGGAGCCGGCCTTCTGTGTGGTCCCAGTTCAGCATGGAGCAGACAGGCCTCAGAACTACCAGATCTGGCAGGGTTCAGATTATATGCCTTAAATGAAGGGCCTCCTTCCACCCAGTGCTTCAGTGTCTCTCTCTGTCACGTGTGGGAACAGTGGACTGAGTGTGTGTGTGTGTTGGTGTGTGTGTGTTTGTCACTTGTTTCCTCTGTGCACTCTGCTGACTGCTCTGGGTCCACCTCTTATTTTACCAGATTCTGTTCTTCTTGATTGTCACCAAGCCAAGTCCCAGGTCCCCAGGTCCTTTGTGGAACTGTCTGCAGTGGTGCTAGAGAGTGATGATTTTCACTCAGCACCACTCCCTTTGCAGGGGAGACGGTGGTCTGTGAAGAATGGGGATTGCACGGCCTGAGAACAGACTGCAGAGTGAAGAGGCGTGTTCCTCACCAGGCTCAGGGAAGGCCAGGGTGTGGGGCTTAGCTGTGCAGCTGTGATCTCTGGATCAGTCTAATACCGTGACTAGTGGTACAGATTCTGTAACCTTCTGTTTCCTGGGACTAGCCCTACTTTTTATTCAAGCTTGTGTTTCTCCTTCTCTGTTTATTCGCCTTTATAATTTTATTTATTTGGCTGTGCTGGGTCTTCCCTGTTGCACAGGCTTTTCTCTAATTGTGGTGCCTGGGCTTCTCGTTGTGGTGGCTTCTCTTGCTGTGGAGCACAGGCTCTAGAACACAGGCTCAATAGTTGTGGCACACAGGCTTAGTCACTCTGTGGCATGTGGGATCATCCTGGATCAGGGATCGAACCCATGTCTCCTGCGTTGGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAAGCCCTATATTGGCCTTTAAAATATCATTTAACTTGGCTTAGATCAAAACCATAGTGGTTATTTAGAGGATAGAGGTGCTAACCCTGCTCAGGGTGAACTCTGCTAGTGGTGATAGCTGGGAACAACTGCTAAGGCTGCTTTCACACACAGCGTTTTTCATTTCTTTCCTTGCGGCTCTCGACCATTTTTTTCTCTTTTTTGCCTTTCCCACTCTCCTGACTCCACTGGCACCTATGCACATTGTTGGTGATAGGCGGGTTCCTGACCCCTCGGGGGGACGATTGGAGCCCCCACCTCATGGCTTTCCTCTCCAGCTGAGCCCACTGTTATGTGGAGGAGTGGCCCACCTCCTGAACCCTGACCGTCTTCGTTAATTAGCGTACATTGATTTATTTACAAGCACCAGGTCTTCACCAGAAGGAATCTGTCCTGTCTCTCTGGGTAGCACAACTGAGGAGCTGGGTTGAAGGCGTTCTAGCAGCTAAGGAATTCCAGCCATCTTCACCTGTTCTTATTGCTTATAGGGTGGTGGGAATGCATGAGCTCATTATCTTCCCTCAGTATTCTTCTTTGTTAGTCATGCTTTTGCCTCAGCTTCAGTAATCTGAAGTAGTAAACTGGCTCGTGTGTCTCTAAAGGCTCTGAAATGTGTTTGCCCTATTCCATTTGGCTCAGTCAGTAAAGAATTGGCCTGCAATGTAGGAGACCCCCAGGTTCGGTTCCTGGATCAGGAAGATCCTCTGGAGAAGGGAATGGCAACCCACTTCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCACTGGATCGCAAAGAGCTGGACACGACTGAGAGACTAACACACACACACATTGGTGGACCTGCTGCCAAACCAGGAGCATTCTTCTATAGGATGAAGAAGGGGATAAATAAACTTCCCATCATAGTAAATTTCAGAAGTGATGTTTATCCTTTAACACTTCGTGAGCATTTTCTTTTGTTACATGATCTATTTCCATTTCCTTTTGTAAGGAGGAAGTCAGTTCTCATGGTTTTCTTAGATTTATGGCTTCACTCTCTTCTTTTCCCCTTAG
Seq C2 exon
ACTTGAGGATCATGGCTGCGGGAAAGTTTGCAAGTCTTCCCAGAAACATGCCAGTGAATCACCAGTTCCCCCTCGCCTCGTCCATGGACCTTCTGAGCAGCAAGTCCCCTCTCGTTGAGCGTCGTGCAGATGCCTATCAAGACGTGTCTATACATGGCACCCTTCCCCGGAAGAAGAAAGGCCCTCCTCCCATCAGGTCCTGTGATAACTTCAGTCATGTGGGGACCCTCCCCCATTCCAGATCCCCACGGCACCACTCACCTCTGATCCAGGATGTCATCCAGGAGCAGCCCCTGCAAGACTGGAAAGGCGAAGCCTTCACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245:ENSBTAT00000063777:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]