RnoINT0025015 @ rn6
Intron Retention
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226563050-226570867:+
Coord C1 exon
chr2:226563050-226563463
Coord A exon
chr2:226563464-226570540
Coord C2 exon
chr2:226570541-226570867
Length
7077 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTCTCTTTCCCTCCTTAGATT
3' ss Score
12.86
Exon sequences
Seq C1 exon
GCTGTCCGGTTGAGTGAGGCTCAGTGAGGAAGAGGTTGAGCTACACTTGAAGTCTAGCTTCTTGGGGGAGATAAGGGGGAGTCAAAACTCTCAAATCCCGGAGATCCAGACGAGGTCACCGAATGTAAATGTCTCAGGGGTTCGGCTCAGCCCGGCGAATCGGCTGAGCGGGGTGGGGCCGCGAAGCCGCAAATCACCAGTTGAGGGCCAGAGAGCGCGCCGCCGGCTCAGAGCTGAGCCTGCGGCAGCCGGGCCAAGCAGCAGCCGGAGTGGGACAGCCGCGCGCACTGACCGACCGTCCCGGCCTCTCGGCGGACGCCCGCAGACCATGAGCCGCCCGAGCTCCCGGAGCAGTGCGGTGCAGGCAGCCCGGCGCTGAACCGCAAATCCGGACCCCGAGCGCGGCGCAGGGAG
Seq A exon
GTGAGTGTGCCCGGTGCGTTCCGGCTCAGGCTCCTGGGCTCCCTCGGTAGTAGCGAGATAGGAGTGAGAAGTTCTGTAAAGAAAAGTTAGGCACGGGGGAAGAGAGCAGCCTGAGTGTGTTTGTACCTCCTGAACCCAGGCAGACTAGACGTGGGAGTGGGGTTGGTCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGGGGATGAGATTTGTGACCTGGGGGGGGGATCATCGGATCCCGGGACTCCCCGGTGTGAAGCTTGGTGATGTGCCTCGAGCATCCCTACCTACTCTCGGGGTCCGGGGCGGTATCTTTCCGGGTGCTCCGAACCCTCTTCTAGTCCAGTCCGGTTTTGCCCGAGTCTGGTCTAAGCTGGGGAGATGAGATGGCCCAGACGCCTCTGCTGGAAGCCCGAGGCTTTCTCCACTAATCTCTTGGGAAGTTTGCAAAGAAAGTGAAGGAGCCTGCCCAGTAACTGTTGACAACATCTCCCTCCCCTCGCCTTCCCTTTGTTGAGAAAGAATGAATAGTTGGTTGTGTGCTTCCCCCCGAGTCGGGGAGGGGAAGGCAAAAGGAAGGAGGGACGGGTCGCAGCCCATCTTCCTTTACTCTCTTAGTCTACGGCCGGCCGCTTAAGAACTTGTGTAGACACTCTTTAGAGGGCGCCTGGCAAAGGCAGCGGGTGCTGTGGTGCAGCGCGTCCCAGGACTAAGGTTTAACAGTTGTTTGAAGCAAGGTGAAGAGGGGAGTAGCCCCAGTGTGGGGTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGGGTGTGTGTGTGTATATATGTGGTGTGTGTGTGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGGTGTGTGTGTGTATATGTGGTGTGTGTGTGTGTGTGTGGTGTGTGGTGTGTGTGTGTATATGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTGTGTGTGTGTGTGTATATGTGGGGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTTTAATTTTCCTACAGCAGTTAGGGATGGAAACTAGAGCCCTGAGTTCAGAGAGTCTTTTCAACCTTGACTGTTATCCCCCAAGGTTCCACAGACCTCTCTATGGCAAGTATACTGGCTCAGGGAAGGTCAGTCTGGAAGCCGATTACCTAATTCTGTCCCTGCTCCCCTCCTCCTATGGAGGCGAGATCCTGAGGGGGGCTCCAGAGGGCTGAGTGGGAAGGGGCCTCTCAGTTATCCGGAAGTCCACTGGCTAAGCTGGATGCCCATCTGCGGGTGTGCCAGGAAGCCTACCCAGTATAACGAAAACAGTTTACCATGCCAAACACCAACTCACTCACAAGTGCTGTGAAAAAGCCTGACATTTCCAAGATGAGTAACCAAGATTTCAGTTCCTATTGATAAGAAAGAACTGCTTTGTCAGATGGGTACTGATCTTAAGAACCTTGCCCTGTAAATCCTTCACTGTATTGCTTGAAATACAATCCATGGAAGAATTATTCATACTTCAATCGGTTGGCTAGACTTCATAAGGTTACTTCAAAAACAAAAGGACACCCTCGATGCCTAAAGCCGAGCCCAAGTTCTAAGTGGAGAAGCCAATTTTATCTGTGGAGTCGTTCCATCCGCCCTCACTGTCTGACTTTGCAAAGAAGATGACAGAACTACATACAGATTTGAATTGCAAATTCTCTGTCAGGGCCAAAGTAAGGGCAGCTAAGGTAGTGGCATTTCCAGTTTGAAATATACAAGTTCTTAAGGCCCTTCCATTGGATTGCCCTGTGTGAGTGTAATTAGAAAATATCCCATTTCAGAAAACAGAAAAAATGAAGCAAGTGGGGTGGTCAGTCTGTTTCTGCCTCAGCTTGCAAGGCCATCAGGTTTTGTAGCATTTATTGTTTCAGTCATCTTTGTAGAGAAGTGAGTTGGACAGAGGTCCTAAACTTTTCAAAGCTCAGCGGCTAACTAGGAAGGCAGGCTGCAAGGCTGCTGGAGTTTGTCGTGAGTGAGGCTCACTCCTACCCTCAGAGTTCCAGACTCTCCAACTCTCCTATCAGTGGATCATCTGACCTTTGTATGTATTTGAGGATCTGACAGTAGAGGCAGAGGGTCAAAGTCTTCACTGGTGTCTGTTTGAAAGCACGCGTATGGTTCACTTGGAGTCTGTGCCCTTTTTGTGCCTATGTCCTCTGGGCTTGCTGTGTTTACATCTGTTGTAGGTTGAAACATCTCCCTCCTCAGCTGTCAAGGTTTCACTTGTGAACCCCCACTTCTGTGGGGACACAGTAAATTAGCTCTGCAGACCTGGCTCCCTCATGGCTGGAGGAGATCCTCTCGCTTGCTGTGTGTCAGAGACTTCCGTGAGCACGATCACATTTAATTTCCACAACAATCCAGGAAGACTTTAACACCTTTAACAAATGACATGCTGACTGTCAGAATGTGGTGTGGCTTGTCCCAGACCTTATAGCTACTATGCCAGAGGCAGGGCAGAGGTTGGAGGTGGTAAATACTGGCTCCAGGACCCTGGTTCTGAGTCAGACCATTTTTTTAAAAGACCAAATGGTACATAAGAAATGTTTAATGACAAGTGGCATTGTCACAGAAACATCTGCGTGCGAGGAATGAATACCCGGGAGCCAGAGTTTAGAAGCTCTGTACAGTTGCTTGAGCCACTTACTCCCAGGTGGGACTGAAATCCTTCCCCTGACCAGAACTGCCTTCAGATCTCTTCTTGCCCTGTCCCTTATCCCTTGCGCCTTTGGATCTCATGTCATCGGAAGTCCTTCAGAAAGACCCTCCCAGACCAGCGTATCACAAAGTTATCTTTTTCTCCAGCCAGCATCTTTTATTATTTCACTGGTTCTGTTTTGGATCCTTTGAGGGTACTTATGACTGCCTGGTTTATTGTTGTGTTTATGTGGTTCTGTTGGACTCCCTATCCCTCAGGTTTCTTGAGAGGGGAGCCTTGTTATAGCTCCAGTTTTAGTGCGCTGTGAGCCCTCACTGAAAGTACGTCAAGTGAATGAACATTATTCCTCTGAACTGGGAAAATAAAATTGGACTGCCAACATTTACTCTTCTGTTTTTTTTTTTTTTAAAGAATTATTTTTTAAAATTTTATGTGTGTTGCTTGCATATATGCCTGAATGAAGGTGTCGGATTCCCTGGAACTGGAGTTACAGACAGTCATGATCTACCATGGAGGTGCTGAATCCAAGTCTTCTGGAAGAGCGACTAGTACTCTTAATTACTGAGCCATCCCTCCAGCCCCCTAACATTTACTCTTACTGTAAGCTTCCTCTATAAAACATTTACCTGGTAAGGTCTAGGTCACCTCATATGGCTTGGTTTTGTTTTTGTTTTGAAGACCTAGTACAGTGTCAGCCATATCTGAGGGCCTGGACTATTTGATTCTGTTACCCAGGTAGACAATTTATGTGAAAGATGCTCTCTACCTAAGAGAATCCCCAATGCTGTCTTCTTAATCCTGGTTCCAGACTGGGTAGTGCCATAGAGCTTTAAAAAGGCTGATGAGTGTCCTACCCACAGAGATTCTGATTTTAGAATCTGGTCTGTGGTTGAGCAACACTGTAAACAGTCCCTATAAGATTCTTACACACGGGGCTGGGGACTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAGATTCTTACACACAACCAGGCTGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAGAACGTATTCTCTACTTTGGTCCCAGCAGGCTTGAGGCAGCCATGGTGAGAGGCAGGGGCAAAGTTCATGTTTTGTTGATAGTTCCTGGTAGCGTGGGAGATACTTTCGTATCCGCTAACATAGGCGGTACTACTGAGTGTTCTGGCTTATGCCCTCGTGTGGATGGCTCCCTCTGGAGCCCTGTCTCACATAACGGACTCTAACCTCTGTCTACACTGAACTGTCCCCTGGTGCCTCACACACAGTTCCAGTTGGTGAGCTTATCTTCTTCCTGCCTGGATCCCTTCTGAGGCCTCTTGTTGAGAATAGCATCATGCTGTCTTCCCATGGCCCTGCCTTCCTTCCTTCCAACTTGGGACCTTGAGCCTCTAATGACTCTACACTCTGTCCTGTCCTTCCTCTTGGCCACGTCCTGAGGACGAAGTTCTTCATTGTTCTTCATAGTTTACTGCCATCTGTCCAAGTGATGCCCCTGGCTTCCCTTTCCAGAATTACCAGAGCCACTTAACAAGTTACAGACCAGATCTCTCTCATACAGGTCTTCTCTGGCACTCACCGGACACGTCCAGACACTTTGCGGAGCCTTTAAGACTCCTCGTCCTAAACTATAGGTCTTTCAGGAAACATTTCTCGACTTCTCCACTCAAGCCACAAGCCGTGGCCTGAAATGTGCTCGGTGTGTGGGGATGTTTCCATATTTTTATGGCTCTGGTGTTACAGTGTCCTCGTAGAGTGCTTTTCCTGATACATTCAATATTTATCTGTCTCTTGTCTTCTCTCCAATCTCTGGGAGTACGTCTATCAAAATTAACTGTTATTCCTTCCAACATGGATGGAGGTTACTGTTTCTGAGTTCTAGGTTGGAGCTCTCTGCATTATACACAGTGGTACTTAAATGTTTATCAAATTAAAAACAGGAAACGAAGACTGTAACAGGCTTTCTTATCAGAATAAATTGAGACTAAGGGTATTCGAGAGGGGCAACTTAGAGTCTTATTAGTTTAATCTCAAACTTAACTCAAACTTGGATGTGCAGAGACGTCAAAGTCACTGAGGCTGAAGTCACTTTTGCTCCTCTTGGCTCCTGGAATAAGCTTGATCAACAGCATGGCCTTTACACATGAAGACGTTTTGTATGGTACTAACGGTGTATGCTGCGTCTCTCTCCCTACCTCTTTGAGATGGTGCAGGCCTGTGAATGAGGAAGGAGGGCGACGAAAGCTCAAACAGAGGCAGTTCACAGCTGTGGTGGGTGGGAGTCGGGTTGGGGACTGCTAGTTCGTTTGCATCACCGGTGGTCAGGTAGAGGGCTAGGAAATTTTGATTTTTTTTCCTTTTTAAATAACAATGATTAACATTGAGTAAGTGCTGACAGAGTGCCAGGAACTGGCCAGGACGGGAGGGCCCCTCCCAGGACTCACCACCCTGTTTTTCTACATCCCTTGTGAGCCAAGCTTTCTATGTGGTCTCACGTGCAGCAGACAAGCTTCTGGGTTATCAAGTCTGGCAAAGAGCAGAGGGCAGGGTTAGGACTATATTCGTGGGTATATTCTGCCCAGTTCCCAGCACTCCTACACGTAGTCTCTCTGACCCATGTAGCAGTAGATTTGTGTGGCTTCGCATACAAAGTATGTTTCTTTTGCAAACTCTTTATTCCATTGCTGCCTCTGTGAGCTCACAGAGTGGTGGCTATGCCAAGCCCATAGTGCCTGTGTAGAGCCAATTCTGCAGGGCTGCTACCCTTCAAGGTCTTTCCCCCTGACCATTGCAATGAAAAGGCCGGTGAGGAATGGGCTCTGTGAGCTTGAGAACTGGCTGTGGACTTCAGCTGTCCCATGGTGATGTGCAGACCCTAGTTGGATCTCATAGGCACTGTAGGACATCTTCTGGGACTTCGGGTATCCAGGGAACTGTTACTTTTTTTTGTTTTAACTAGGGCTCCTGTTTGATGTGTGTGTTGGCCTTGATGGGTCTTATATAATGCGTGAAACTGTAGTTTAGTTTGGAGATTAAGCACTGTTCCAGGCAAACGACTGCCAGCCATCCCTGCATCCCTGGGAACAGTTGTAGGAGCTGCTGCTGCTACCTCGACCGCCATTTTCCTCTATGGCTGTGTCCCGCCCCCACTTTCTTATTCTTTCCCCCCTAACCTTTTTCTTCTTCTCTGCTTTTACATCTACCTGTGGGCACTGGCTTGCAGGCTCCAGTCTACTCTTGAAAATAGTCTACAGGGTGTTAACACCCGATGGCTTCTTGCTGCAACTGAGCTTGCTGATGCGTGGAAGAGAGGCCCACCCTGACCCCTGACCCTGCCTCGGTTAATTGGAATACAGAGATTTATTTATAAGCCTCAAGCCTTTGCCAGAGAAGCTGCCCTATCATTGTGGGTAGCACGATTTTGGTCTGGCACTGCAGAAACTCCAGCAGCTAAAGAATTCCAATCATCCCTGACCGTTTTTCTCATTTGCTGGGAGGTGCATCAGTGTAGCCATCATCAGACGGCTTACAGTGTTTTCCCTGGTGTTTATTGTCAGTCCTTCGGATAACAGTCTTTTCCCCTTAATTGCATCCTCCCCTTCTGTAATGATAAAATGGCTCCTGTGCCTCTAACAACCTGGGGTTGTGTTCATCTATTTGGATTTGTTGCCCATAGCTGAATTTCTCTACAGAATCCTGAAGGAAAGAGAGAAAGAAGGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGGGGAGGAGGAGAAGAGAGAGAAGAGAGAGAAAGAGAGAGGAGAGGAGAGAGAAGAGAGAGAGAAAGAGAGAGGAGAGAAGAGAGAGGAGAGAAGAGAGAGAGAAGAGAGAAGAGAGAGAGAGAGGAGAGGAGAGAGAGGAGAGAAGAGAGAGAGGAGAGAAGAGAGAGACAGAGAGAGAAAAGAGAGAAAGAGAGAGAGAGGAGAGAAGAGAGAGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGCAAACTCTCTATTCAAGGTTCTACTAGTGATGTCTTTAGACAGTGTCTGCCTTTTGCTGTCTCATGACTTTTTCCAGTTTCTGGTATCTGTCTTACTTTTACCTTTCCCTCTCTTTCCCTCCTTAG
Seq C2 exon
ATTAAGAATCATGGCTGCGGGAAAATTTGCAAGCCTTCCCAGACACATGCCCGTGAATCACCAGTTCCCTTTGGCCTCGTCCATGGACCTCCTGAGCAGCAAGTCCCCTCTCGCTGAGCATCGCACAGAGGCCTATCCAGACGTGTCCATACACGGCACTCTTCCACGGAAGAAAAAAGGCCCTCCTCCCATACGGTCCTGTGACAGTGCCAGTCACATGGGCACCCTCCCTCACTCCAAGTCCCCACGACAGAGCTCACCTCTGACCCAGGACCTCATCCTGGAAAAACCACTGCCAGACTGGAAAGGGGACAGCTTCGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737:ENSRNOT00000065111:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.623
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]