MmuINT0024341 @ mm9
Intron Retention
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122122698-122129672:+
Coord C1 exon
chr3:122122698-122123101
Coord A exon
chr3:122123102-122129362
Coord C2 exon
chr3:122129363-122129672
Length
6261 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTCTCTTTTCCCTCCTCAGAGT
3' ss Score
11.82
Exon sequences
Seq C1 exon
GTAAGGAAGAGGTTGAGCTACACTTGAAGTCTAGCTTCTCGGGGGAAGATAAGGGGGAGTCAAAACTCTCAAATCCGGGCGGAGGAGAGCCAGACGAGGTCACCGAATGTAAAAGTCGCCGGGGTTCGGCTCAGCCCGGCGAATCGGCTGGGCGGGGTGGGGCCGCGAAGCCGCAAATCACCAGTTGAGGGCCAGAGAGCGCGCTGCCGGCTCAGAGCTGAGCCTGCAGCCGCCCGGCCAGGCAGCAGCCGGAGCGGGACAGCCGTGCACACCCGCCAGCCGCACCAGCCTCTTGGCGGACGCCCGCGGACCATGAGCCGCCCGAGCTCCGAGAGCAGCTGCGGTGAGGTGAGAGCAGCCCGGCGCTGAACCGCAATCCCGGACTCCGAACGCGGCGCGGGGAG
Seq A exon
GTGAGTGTGTCCCGTGCGTTCCTGTTCAGCCTCCTGAGCTCCCTCGGTCGGACTGAAACAGGACTGAGAAGTTCTTTAGAGTAAAGTTAGGCATGGGGAAGAGCGCAACCCCCGTCTGTTTGTACCCCCGAGCCCCCGCAAACTAGACATGGGAGTGGGAGTGGGGGTGACCAAAGTGTGTGTGGCGGGGGAGGGAGGGTGAGACTTGTGCCCTCGGGGGTCCTCGGATCCCGGGACTCTCGGGAGTGGAGCGTGGTGATGTGCCTCGAGCATCCCCATCTACTCTTGGGCTCCGGGGCGGAATCTTCCCGGGTGCTGGTTTCTGGACCCCTCCGAACCCTCCTGCTAGTCCAGTTCGGTTTTGCCCAAGGCCGCTCTAAGCTGGGTAGACGAGCTGGCCCAGACGCCTCTGCTGGAAGCCCGAGGCTTTCCTCCACTAATCTCTTGGGAAGTTTGCAAAGAAAGTGAAGGAGCCTGCCCAGTAACTGTTGACAACATCTCCCTCCCCTCGCCTTCCCTTTGTTGAGAAAGAATGAATAGTTGGTTGTGTGCTTCCCCCTGAGTCGGAGAGGGGAAAGCAAAAGGAGGGAGGGACGGGTCGCAGCCCATCTTCCTTTACTCGCTTAGCCTGTGGCCACTTAAAAACTTTAATCAGGTGTAGACTCTTTTTGAAGGGCAGGTGGCAAAGGCAGCGAGCCGGTGATGTGGGGCAGCGCGTCACAGGACTAAGGTTTAACGGTTGTTTGAGGCAAGGTGAAAGGGGGAGTAGCCCGAGTCTAGTTTTTTTTTTTTTTTTCAGTTTTTGTTTTTGTGTTTTGTTTTTCCCTACAGCAGTTAGGGATGGAAAGTAGAGCCCGGAGTTCAGAGAGTCTTTTAAACCTTGACTCTTATCTCCCAAGGTTCCACAGACCTCTCTATGGCAAGTACGTTGGCCCAGGGAAGGTCAGTTTGGAAGCTGATTATCTAATTCTGTGTGGTCCCCCCGCTTCCCCGGGGGGAGGCGAGATCCTGAAGGGGGCTTCGTCACTCTTCGGGAGGCCCACTGGCTAAGCCGTTTGCCCACCCGCGAGTGTGCCAGGAAGCCTCCCCAGTATAAAGAAAACAGTTTACCACGCCAAACACCAACTCACTCACAAGTGCTGTTCAAAAGATCTCAGTTCCTATTGATAAAGGACTGCTTTGTCAGATGGGTACTACTCTTAAGAACCTTACCCGGGCAATCCTTCACTTTATTGCTTGAAATACAATCCGTGGAAGAATTATTCATACTTCAATCGGTTGGCTAGACTTCATAAGGTTACTTCAAAAGGACACCCTAGGTCCCTAAAGCCAAGCACAAGTTCTAAGTGGATAAGCCAATTTTATCTGTGGAATAGTTTCCTCTGCCCTCACTGTCTGATTTTGCAAAGAAGATGAGAGAAGTATAGGTTTGAATTGCAAATTCTCTGTCATGGCCTAGGTGAGGGCAGCTGGGGTAGTGGCATTTCCAGTTTGAAATATACAAGTTCTTAAGGCCCTTCCTTAGATTACCATGTGTGAATGTAACTTGAAAATATCCCATTTCAGAAAACAGAGACAACTCGAAGCAAGTGGGGCAGTCTACCTCCGCCTCCGCTTGCAAGGTCGTCAGGTTTTGTAGTATTGTTTTGGTCATCTTTGTAGAACAAGTGAGTTGGACAGAGGTCATAAACTTTTCAAATGCTCAGCGGTTAACTAGGAAGGCAGGCAGGCGGCAAGGCTGCTGGAGTTTGTCATGAGGTTCACTCACACTCTCCGAGTTCCAGACTCTCAAACTTTCCTATCACTGGATCGTCTGACCTTTGTATCTATTTCAGGATCTGACAGTAGAGGAGGATGGTCAAAGTTTTCACTGGTGTTTGTTTGAAAGCATGGCGGTTCACTTGGAGTCTATGCCCTTTTGTGTCTTTGTCCTCTGCGCTTGGTGTGTTTATATCTGTTGTAGGTTGAAACATCTCCCTCCTCAGCCTCCCTAGCTTCCAAGGTTCTTTTTTTTATGTGAACTCCCACTTCAGTGGGGACACAGTAAACAATCTAGGCAGCCTTGGCTCCTGCACGGTTGGAGGAGATACTATTGCTTGCTGTGCAAGCAAGTCATGAACTTCATGCCTATGATCACATTTAATTTCCACAACAATCCATGAAGACAGGATCGTTGACACCTTTCACGAATGACCCACTGACTGTCAGAGTGTGCTGTGACGTGTCCCAGACCTCATAGCTACCACGCCAGAGGCAGGGTAGATCTTGGAAGCAGTAAATACTGGCTCCAGGACCCTGATTCTGAGTCATACTTTTTTTTTTTCGGATGACCAACTGGTACACAGAAGTGTGTAGGGGCAAGCGGCCTTGGCACAGAAGCATCTGCAAGAGAAGACTAAAGCTCTGGGCAGTCGCTCTAGCCACTCATTCCCAGGCTGGTTGCACTGGAATCTTTCCCCTGGCTGGAGCTGCCTTCAGATCTTCCTGAGCCTGATCCCTTATCTTTTTTCCCCTTAGATCTCGTGTCCTTGTAAGCGAAAGACCCTCCCAGACCAGCGTATCATCAAAAAGTTATCTTTTTCTCCAGCCAGCATCTTTATTTATCATGTCACTCTTGTTCTGTTTTGGATTCTTTGGGGTACTTACAACTTGGGTGTTGCCTGGTTTATTGTCGTGTTTATGTGGTTTTGTTGGACTCGGTACGCCTCAGTTTTAGGCTTCCTGAGAGCAGGGCCCTATGATAGCTCCATTTTTAGTGCCCTGTAAGCCTTCACAGAAAGTCAAGTGAATGAACACAAGTCCTCTGAACTGGGGAAATGAAATTGTACTACCAGCATTAGAGTAAATGCTGAGTAAAAAGAGTATTTTTAGAAAATAATTATTTTTTAACAATTTTATGTGCATAATGGTGTTTGGCCTGCATATATGTCTGTATGAAGGTGTCAGATCTCCTGGAACTGGAGTTGCAGACAGTCATGAGCTGCCTTGTAGGTGTTGGGATTTGAATCTAGGTCTTCTGGAAGAGTGACTAGTGCTCTTAATTACTGAGCCATCCCTCCAATCCCCAACATTCATTCTTACTGTAAGCTTCCTCTATAAAAGATTTAACCTTGTAAGGTCTAGGCCACCTCATATTGTTTGGTTTTGTTTTTATTTTGAAGACCTAGTACAGTGTCCACCATATTTGAGGCCTTGCATCATTTGATTCTGTTACCCAGGTAGACAATTTAAGTGAAAGATGCTTGCTACCCAAGAGAATCCTCCAATGCTGTCTTCTCAATCCTGGGTCAAGACTGGGCAGTGCCATAGAGCTTTAAAAATGCTGATGCGGTGTCTTCCCCACAGAGATTCCGATTTTAGCATCTGGGCTGTGGTTGAGCCTCACAGTAAATAATCCGTATAGGATTTTTACACACAACCTGGCTGAGCCATGGGTTTCTGTGTTTTCAGAACTTCTTCTCTACTTTGGTCCCGACAGGCTTGAGGCAGCCATGGTGAGAGGTAGGGATGCAGTCCATGTTCTGTTGGTGGTTCCTGGTAGTGTGGGCGATACTTTCACATCCACTATCATAGGCGGTACTACTAAGTGCTCTGACCTATGCCCTCCATGTTGGTGACTCCTTCTGGAACCACGTCTCACATAACGGACTCTAACCTCTGTCTACACTGAACTGCCCCCTGGTACCTCACACACAGTTCCACTTGGTGAGCTTATCTTCCTCCTGCATGGATCCCTTCTGAAACCTCTTGTGCATAGTAGCATCATGCTGTCTTCCCGTGGCCATGGCTTCCTTCCTTCCTTTCAACTATGGACCTTGAGCCTCTAATGACTCTAAACTCTGTCCTGTCCTTTTTTTCGGCCACTTCCTGAGTTCGAAGTTCTTCATTGTTCTTCATGGTTTACTGCCATCTGTCCCAGTGATGCCCCTGGCTTCCTTTTCCAGAATTACCACAGCCACCATCAATATACAGACCAGATCCCTCTCATATAGTAGACCTTCCCTGGCACTCACCAGACAAGTCCAGACACTTTGACAGAGCCTTTAAGACTCCTTATCCTATGTTGTAGGTCTTTCAGGAAACATTTCTCAACTTCTCAAGCCACTAGCCATGGCCTGAAATGTGCTTAGAGTGTGGGGATGCTTCCATACCATCATGGCTCTGGTGTTACAGTGTCCTCTTAGAGGGCTTTTCCTGACACATTCCATATGTATTTGTCTCTTGCCTTCTCCCCAATTTCTAGGAGTACTTCTGTCAAAAGTAACTGTTGTTCCTTCCAACATAGGGGTTGGTTGCTGCTTATGAGTTCTAGGTTGGAGCTCTCTACATCTTATAGACAGTGGTACTTAAATGTTTGTCAAATTAAAAATGGGAATAAGAAGACTTTAACAGACTTTGTTTTCAGAGAATAAGTTGAGACTCGGGGTACACTAGAGGGCTTTTTAGAATCTTAATGAGCACAATCTCATACTCAACTCCAGCTCAGACTTGGATGTGCAGAGAAGACGTTGTCACTTTTGCTCCCTGTGGCTCTTGGAAATAGACTTGATCAACAGCGTGTCTTTTACACATGAAGATGTCTTGCATGGTACTGATGGCATATGCTGTCTCACTCCCTACCAGTTTGAGATGGCGCAGGCTTGTCAATGAGGAAGGAGGGCGATGATAGCTTGACCAGAGGCAGTTCACAGCTGTGTGGATGGCTGGTGGGTGGGAGTAGGGTTGGGGACTGCTAGTTGGTCAGGTAGAAGGCTAGAAAATTTTGATTTTTTTTTTAATAACAATGATTAACATTGATTAAGTAAGTGCTGACAGAGTGCCAGGAACTGGCCAGGACGGGGAGGGCCCCTCCCCTCCCAGGACTCACCACCCTGTTTTTCTATATTCCTTGTGAGCCAAGCTTTCTATGTAGTCTCACGTACAGCAGACAAGCTTCTGAATTATCAAGGCTGGCAAAGAACAGAGGACAGGGTTAGGACTTTATTCCTAAGTATATTCTACCCAGTTCTCAGAACTCGCACATGTCTCTCTGATGCGTGTAGTAGTAGATTTGTGTGGCTTCGCATACAAAGTGTGTTTCCCTTGCCAACTCTTTGTCCCACCACCACCTCCGGGAGCTCACAGGGTGGTGGTTAAGCCAAGTCCACAATGCCTATGTAGAGGCAGCTCTGCAGGGGTGCTATCCCTTCAAGTTCCTTCCCCCCCCCCCCCCCCACCCCACCATTGCAATGGAAAGGCTGGTGAGTTGAGAAATGGACACTGTGAGTTTGAGAACAGGCTGTGGACTTCAGCTGTCCCATGGTGATGTGCAGACCCTAGTTGGATGTCGTAGGCAATGTAGGGCATCTTCTGGGACTTCAGGTATCTAGAGAATTGTTACTTTTTTTTTTTTTTTAACTAGAGCTCCTGTTTGATGTGTATGTTGGCCTTGATAGGTCATATATAGTTTGACTTGGGTCAAATTCTAGTTTAGTTTGGAGCTTAAGCATTGTTTGGGGCAAATGACTGCCAGCCACCCCTGGGAGCCACAGTTGTTGGGGCTGCTGCTGCTACCTCCCTGGCCATTGTCCTCTTTTGCTGTGTTCTTACTCTTTCCCTCTAACCTCTTTCTTCTTCCCTGACTTCACATGTACCTGTGGGCATTGCTTACCCCTGCTGCTGGCTGGCAGGCTCCAGTCTCCTCTTGGAAATAGTCTACAGGGTGGTACCACCTGATGGCTTCCTGGTGGAACTGAGCCCGCTGATGCATGGAAGAGAGGGTTACCCCTGACCCTTGACCCTTGACCCTTGGTTAATTAGAGTACAGCGATTTATTTATAAGCTTCAAGCCTTTGTCAGAAAGGCTGCCCTATCATTGTGTCTAGCACAATTTTGGTCTGGCACTGCAGAAATTCCAGCAGCTAAAGAATTCCAATCATCTCTGACCATTTCATCATTTGCTGGGTGATGGATCGCTGTAGCAATCATCCGACAATTTACAGTATTTTTGTCCTCCCCTTCCATAATGCTAAAATGGCTCCCATGCCTCTAACAACCTGGGATTGTGTTCACCTGTTTGGATTTGCTACCCATCCAGCTGAATTTCTCTACAGAATCCTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTCTCCACTCATACGAGGTTCCACTAGTAATGCCTTTAGACAGTATTTACCTTTTGATATCTTGCAACTGTTTCCAGTTTCTTATATCTGTCTTACCTTTGTCCTTCTGTCTCTTTTCCCTCCTCAG
Seq C2 exon
AGTTAAGAATCATGGCTGCGGGAAAGTTTGCAAGCCTTCCCAGAAACATGCCTGTGAATCACCAGTTCCCCTTGGCCTCGTCCATGGACCTCCTGAGCAGCAAGTCCCCTCTTGCTGAGCGTCGCACAGATGCCTATCAAGACGTGTCTATACATGGCACTCTTCCACGGAAGAAAAAGGGCCCTCCTTCCATACGGTCCTGTGACAATGCTGGCCACTCCAAATCCCCACGACAGAGCTCACCTCTGACCCAGGACATCATCCAGGAAAACCCACTGCAAGACCGGAAAGGGGAAAACTTCATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121-Bcar3:NM_013867:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.695
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: