GgaINT1011411 @ galGal4
Intron Retention
Gene
ENSGALG00000026503 | DLX4
Description
distal-less homeobox 4 [Source:HGNC Symbol;Acc:HGNC:2917]
Coordinates
chr27:2998452-2999843:-
Coord C1 exon
chr27:2999650-2999843
Coord A exon
chr27:2998710-2999649
Coord C2 exon
chr27:2998452-2998709
Length
940 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CACCCCACTCTCGCCCGCAGGTC
3' ss Score
10.92
Exon sequences
Seq C1 exon
AGCCCAACAAGCCCCCGCCGGTGGCCAACGGCGAGCTGCGCCTCAACGGCAAGGGGAAGAAGCTGCGCAAACCACGCACCATCTACTCCAGCCTGCAGCTGCAGGCCCTCAACCAGCGCTTCCAGCAGACCCAATACCTGGCGCTGCCCGAGCGCGCCGAGCTGGCGGCCCAGCTGGGGCTCACCCAGACCCAG
Seq A exon
GTAGGGCTGAACCCCCCCGACCCCAACGCGCGGTGCCTCCCCAGGGGGACGCGCACGGATTGAGTCCGGCTCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCGTGCAGCCGGCGCCGTTGGGGCCCCGCGGGTGGGATTTGGGGTGCCCCTTCTCGCACCTCCCAGAGGCGGAGGGACTTTCCCAGCCCTGGAGCCTGGCTGCTGGCCCAGCCGTGCCCGGCGTTGGGCGGCCCCGCGCCGCGGGACGGGGTGAGTGGGTTTTTGAAGGCGATGGGGAGAGACAGGCAGGCGGCAGCGGTGCAGCCCGGAGCCAGGGGCGAAGCGAGCTCATAAAGACGGGGAAGAGGAGACAAGTGGGAACCTGCCGGCAGCGCGGGGGGGACCGTGGGGAGGAATGAGTGGGGCCACCACCCCGAGCAGAGCGCTGCGGGCCCCACGGCGCCGCGCCCCAGCGGTGCTCCGGTGCCCGGGTTGGGCTGCAGGGGGCACAGCTGGGGGGACGCGCAGGGCTGGAGGCTCCTGAGCCGTTCTCTGTCCGCTCGCCGTGTTTCCCTTATCGTCTCCTCCTCCGGCTCCCCGCGGTGGATTCTTCGGTGGCTCGTATAGGGTTGGGCTCATCTCGTGGGCCCTCACACGGGTGTACCCCTAAGTGGGGGATGCAACAGCTGCAAGATGATGGCGCCTGGGGGGTGGGACACTGCACCGGTGCCACCCTCCCCACATCCCCGCTCACCCCACTCTCGCCCGCAG
Seq C2 exon
GTCAAGATCTGGTTCCAGAACAAGCGCTCCAAGTACAAGAAGATCATGAAGCAGGGCTCGAGCGCAGCCAACGAGGAGCAGCAGCACCTGCACACCTCCTCCTCGCTGTCCCCCTGCTCCCCCAGCATCCCCCCGCTCTGGGACATCCCTGTGCCGGGCAAAGGGCCCCCGCTGCCCCCCAACAACTACATCAGCAGCTTCGGAGCCTGGTACCAGCCGCACCCGCAGGACTCCGTGCCCCGTGGTCCCATGATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026503:ENSGALT00000038005:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=64.6)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACGGCAAGGGGAAGAAG
R:
TGCTGATGTAGTTGTTGGGGG
Band lengths:
349-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]