MmuINT1008667 @ mm10
Intron Retention
Gene
ENSMUSG00000020871 | Dlx4
Description
distal-less homeobox 4 [Source:MGI Symbol;Acc:MGI:94904]
Coordinates
chr11:95140447-95141979:-
Coord C1 exon
chr11:95141789-95141979
Coord A exon
chr11:95141470-95141788
Coord C2 exon
chr11:95140447-95141469
Length
319 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GTCCTCTTTTCCTCTCAAAGGTA
3' ss Score
9.56
Exon sequences
Seq C1 exon
AATCAGAGAAGCTGGCACTGTCTCTGGTGCCCTCCCAGCAGCAGTCCCTGACCAGGAAGCTGCGCAAGCCCAGAACCATCTACTCTAGCCTGCAGCTCCAACACCTGAACCAGCGTTTCCAGCACACCCAATACCTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCACAACTCGGACTCACCCAAACCCAG
Seq A exon
GTAGGGCCAGTCCTGTCCCTGCTCAAGGCAAAACTTCCCATTCTCTGCCCTCTGAGAACCCACAAAGGAGTCCCACAATTTTGCTGACACGGCTCTTGGATAAGCAGTGCCCATAGCTGGTCCACAGCATGAGTTGGGGGGTACATGTTAGAGGAGAATGAGACTCAAGAAGAGGAGTGTGCCCAGACAGGAAGCTGAGACTGGGGGATTCCAGAACTGAAGAGCTGGAGCAAAGGTTCCCAGGACTCACTCTCTGTGGCCAGGTCCCTTCCCACACCTTTCATAGACACTCCTAATCCGTCCTCTTTTCCTCTCAAAG
Seq C2 exon
GTAAAGATCTGGTTTCAGAACAAACGCTCCAAATATAAGAAGCTCCTGAAACAGAGCTCTGGGGAGCCGGAAGAGGACTTCTCTGGGAGACCCCCCTCCCTGTCTCCCCACTCTCCAGCCCTACCATTCATCTGGGGTCTACCCAAGGCAGACACCCTGCCTTCCAGTGGCTATGACAACAGCCACTTTGGTGCCTGGTATCAGCATCGCTCCCCAGATGTGCTGGCACTGCCTCAGATGATGTGAGTCTGGAGGGAGGCTGGTCAGACTTCAGCCCTCCTGTCAAGCCCAGGACCCGAGCACCTGCTCCCCTTCTGGGAGGAGAGGAAACCAGCTCCAGATGGATTTTCTCAGAAGACAAGACACCGAAGGAGAAAAAGGGAAAGAATGGTGTGGAAGCCTGGCTCTCCAAAGCAGAGAGTTAGATCAGGGGCTTTGGACGGCCACAATCTTGCCACTCCCTCTCCTTCAAATGACTGCAGCCCCAAGCACAGCCCTAGGATCCAAACCAGGAAGAAAACAAATATTATTCCTGGCCTGCACCATGGGGGCCCAGACAGCCCTTCCAGGAACAAAACCAGAAGTGGACACAGGGTCTGTGTTGTTGGCCACCATAGAGTCTCCGACTTTCATTTACTAATTACTGGTGGTGGCCCAGTGGTAGAGTGAGTGTTTAACATGTAAAAGGCCCCAGCTCCAAAGCAAAACTTGTGGACCTGTGGGCAGCTTGTGCTTCTCCGCTTTAAACGGCTCTCTAGCGCCATATCTACCCATTTTGAATTGATAGCCATGGGCTTAATCGTCCATATAATTCAACAGTATGTATTAAGAGCCTAGGCCCACGACTCTCCATCCTTAACACCTAACAAGTTCACCTGCACACATTGTTGGAAGCCCAGAAGGAGAAATGGGACAAACAGATTACCAGGATCAGTGCAGGCATAGCTCCTCGCTGTTGCCTCGATCAAAGAAACTGCTCTCAAATCACAAGCTATTAAAATGTATATATGTATTAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020871:ENSMUST00000021241:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.259
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=65.6)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=15.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGCCCAGAACCATCTAC
R:
ATCTGGGGAGCGATGCTGATA
Band lengths:
348-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types