GgaINT1011665 @ galGal4
Intron Retention
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4530966-4532454:-
Coord C1 exon
chr8:4532228-4532454
Coord A exon
chr8:4531203-4532227
Coord C2 exon
chr8:4530966-4531202
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AATCTCTGGTATTTTACTAGGTC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GTGAAAGAATTTATCAACGCTGAGCTCCTGGCTCACCTGTATTCTTCTGAGGACCAAAATACTCTAATGGAGGAATCAGCTGAGCAGGCACAGAGGCGAGATGAAATGCTCCGCATGTACCAAGCTCTAAAGGAAGCCCTAGCAATCATTGGTGATATCAGCACTAGCACTGTGTCAACCCCTGCACCACCTCCTGTAGACGATTCTTGGCTTCAGCAGGCCCGCAG
Seq A exon
GTAATGTTCTTCATTTGCTTTGCAATGAAATTTGGGAAAGGCAGACATTATTAGCATTAGCAACTCCCTTCTTACCCGTGTTTTGGGCAGGTACTTCTCCAGGTCTTTAATGACACTTGTGAGGGAAATCAGACATCTTGGTATTATTTAGATGCTATTTCGAGCTGCTTAGAGTACATTAAGATAAAGAACATGCAGATTTCTTTTCCTGCATGCTGCCTAGAATACCTGACACAAGACAGACGTTAAATACCCATGAGCACTTTCTAGTAAAGCCGTCAGCCTTTTCCCCAGCATCCTGTGTTCTGTTCAAGCCTGGCTTGGAGAAAAAGCTGCTTCTAGTTCTGGTTTCAGTGAGCTGCATCTTACCTAAAGTGCCAGGAGCTTTGTGTGCTACCATGTTATACTAGCTGGAAGCCGAATCGAGAAACCCAGATCCTGTGCTCCACAGCAGATGTGAACCTGCATGCATGCTGTATGCCCCAATTTATGTTTATTTTTCACAAACCTTTTCCCACGTATACACGTTCTATGGGTATGTATATAAACACCAGACAAGACATTTGTCTGTGAGAATACCTTACGTTGGATTTACAGCTTGTCTGATGCTTCAGATAGCAGCCACTTCTGCCACCAAATGGTGTTTTAACTCCTTTATTGCAGAAATCCCACCTGTCTCTGCAAACTAACCCCAACTGTGTATCCACAAGGCTTTTTCTTGCAAGCTTTTATTCAACTTCAGTCCTTCAGGCTGCATGTCCTAGCAAATCCTTTTCATACAACACTGTTAGAATCCCAGTATTTCAATCCATGACATTTTAGCTCTTTGCCTGTATTTCTCTTTCTTCTATCTCAGAGCATGCTGTCTATGGGAATGGTATATGTTAGATATAAATACAGGTCTGAAACTGGCAGCAAAGGGGATGCAAAGCAAAAAAACAATGTTTTCACTTCTATTTTTCTTTTTTTAATGAATAAAATATTTGCACTGTATCAAACATCTTCAATCTCTGGTATTTTACTAG
Seq C2 exon
GTCGCCTCCTCCAAGTCCCTCAACTCAGAGGAGGCCTACATTAAATAATCCTCCCACCAGACCTTTATCTGGCCGAGGACCTGCTCCTGCAATCCCATCTCCAGGCCCTCAGTCAGGGGCTCCCCCGGTCCCATTCCGCCCAGGACCATTGCCACCATTTCCAAGTGGTGGTGAAGCCCATGGAGGACCTCCCCAAGTTCCTTCTCGGCCGACGCGGGCTCCTCCCAGTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164:ENSGALT00000005010:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=68.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAATCAGCTGAGCAGG
R:
CATGGGCTTCACCACCACTTG
Band lengths:
342-1367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]