MmuINT0051812 @ mm9
Intron Retention
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:163940999-163942058:-
Coord C1 exon
chr1:163941832-163942058
Coord A exon
chr1:163941236-163941831
Coord C2 exon
chr1:163940999-163941235
Length
596 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
3' ss Seq
AACTGTGTCTTTTTTCTCAGGTC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCTTCTGAGGACCAGAACACTCTGATGGAAGAGTCCGCGGAGCAGGCTCAGCGCCGAGATGAGATGCTCCGAATGTACCAAGCCCTGAAAGAAGCTCTCGCAATCATTGGTGACATCAACACGGCCACGGTGTCCACCCCAGCCCCACCTCCAGTCGATGACTCCTGGCTCCAACACTCCAGGAG
Seq A exon
GTTAGGAAGGAAGCCACTGCCCAGCAGCACTGAGCTCCTTTTAGCTCACCCACTCTCGGCTTCTGAGGATGCTTTGCCAAGATAGTGCCAACCCACAGAGAGAGAGGGGGTCAAAGGGCACCAACTCCTCTAATGAACAAGCTTAATGCATCCTTAGAATGAAACTTGATAGTGGTTAAAAGAGTAAAATAGTGCCAAGTGTCCCAAGTAGAAAGATAAGCTTAAAACAAGGGAGCGCGTAGGCCATTATACGTACAACATACGTACGTACATACATACGTACATACATGCATGAGAAAATAGTCACATACCTTATGTTTAAGAAGAAATATCAACAATTGTTATTGTCTCCAGAGGGTGGGATGAAGGAAGGAAACTGAAAATATCAGCATTTATTTTTTTATGCCTCTAGAAATCTTATAATGTGTATCTAAGTTATATAGTCAAAAAATTAATTAATTTTTCATTTTTAGTTAATTTTAAATCATTCATTTTTTAAAAGCAAAACTGTTACAAAAGTTACAAAACTGTGTTTTAAAGATTAATTGCGACAAGAAGGAAGAGTGGAATAATCAAAACTGTGTCTTTTTTCTCAG
Seq C2 exon
GTCACCTCCTCCGAGCCCCACCACCCAACGAAGGCTGACGATAAGTGCTCCCCTCCCAAGGCCCACATCTGGCCGTGGGCCAGCTCCCGCTATCCCCTCTCCAGGCCCCCACTCCGGAGCTCCCCCAGTTCCATTCCGTCCTGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTTTGGAGCCCCTCCGCAAGTTCCGTCCAGGCCCACCAGGGCACCCCCCAGTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-Dnm3:NM_172646:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=68.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCTCTACTCTTCTGAGG
R:
GTAATGGGCCAGGACGGAATG
Band lengths:
349-945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: