RnoINT0049868 @ rn6
Intron Retention
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79927632-79928626:-
Coord C1 exon
chr13:79928400-79928626
Coord A exon
chr13:79927869-79928399
Coord C2 exon
chr13:79927632-79927868
Length
531 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
3' ss Seq
AACTTTGTCTTTTTTCTCAGGTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAG
Seq A exon
GTTAGGGAAGAGGCCCAGCAGTACCTGAGCTTGTCCACTCTCCGTTTCTAAGGATGCTTTCCCAAGACAATGCAGACCCAAAGGGAAAGGGGGCTCAAATGCATGAACTCTTCTCATCAACAAGCTAAATGCATCCTTAGAATGAAACTCGATAGTCATTAAAGGAGTAAAACAGTGCCAGATGTCCCAAATGGCAAGATAAGCTTAAAGCAAGGAAGATGGTCGTTATCTATCATACATACATACATGCATGCATGCAAAAATATTCACATACCTTATGTTTAAGAAGAAATACCACCAAATGTTATTGTCTCCAGAAGGTGGAATGAGGGAAGGAAACTGAAATATCAGCATTTATTTTTTTTATAACATGTATCTACGTTATATAGCCAAAAAAGTAATTAATTTTTAAAAAGCAACTTGGAAGTTACAAAACTGGTTTTTTTTGGGGGGGGGGTGTTTTTGTTTTTTAAAGACTAATCGAGACAAGAAGGAAGCGTGGAATAATTAAAACTTTGTCTTTTTTCTCAG
Seq C2 exon
GTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCTCCCGAGGCCCGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGGGCTCCCCCAGTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACGGAGCCCCTCCACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490:ENSRNOT00000067653:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.557 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=68.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACTCCTCTGAGGACCA
R:
GTAATGGGCCTGGACGGAATG
Band lengths:
344-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]