GgaINT1012990 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5466428-5466821:+
Coord C1 exon
chr17:5466428-5466545
Coord A exon
chr17:5466546-5466720
Coord C2 exon
chr17:5466721-5466821
Length
175 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AGCTTCTTTGTCTCCTCCAGAGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GAGGAGTCCCACAAAAGAGAGTTTGCTGAGAAGTTGGAGTCCCTCTTGCACCGAGCCTACCACCTCCAGGAGGAGTTTGGGTCTTCACTTCCATCAGACAGCATGCTGCTGGATCTGG
Seq A exon
GTGAGCTGGGTGTGAAATGCATTAGTTAGACAGTTCTTCTGTTTTTCTTTTCTGTGAGCAAAGCAAAAGAGCGTTGGCAGAGTGCTCCTATGAGGGTGGGAGTGAGAGCGTAGTGACTATAGGAGGAATAGTAGTCTGTGAACTCCAACATGTGCAGCTTCTTTGTCTCCTCCAG
Seq C2 exon
AGAAGACTTTAATGCTTCCATTGACGGATGGGTCATTACGGCTTCGGACAGATGATGAAGACAGCTCAATTTCTGAGGACTCCTTCTTCTCTGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTCCCACAAAAGAGAGT
R:
TCTGCTGCAGAGAAGAAGGAGT
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]