MmuINT0062073 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30231193-30232266:+
Coord C1 exon
chr2:30231193-30231310
Coord A exon
chr2:30231311-30232165
Coord C2 exon
chr2:30232166-30232266
Length
855 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCAGTCTTACTCCCTTCCAGAGA
3' ss Score
7.8
Exon sequences
Seq C1 exon
CCAGAGTCCCAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGCTGCACCGGGCCTACCACCTGCAGGAAGAGTTTGGCTCTACCTTCCCCTCTGACAGCATGCTGTTGGATCTTG
Seq A exon
GTGAGCTGGAGCACACAGGCTGCTGTGGGCCTGAAGTGCAAGAATGGAAGGGGGGGGGCGGGGGGCAAATCTAGAGAGCCAGGGCATGTTTCCCCAGAGCTGCAAACAAATTCAAGTTTGAACAAATAGGGAGACCGAGGTAGGTATTCCCTTAAAATGGCAGACAGACACTGAAGCAAGATGAGGCTCGGAGTCCATAGTTTGTGTGCTTTGCCCCGGCCTCTTGAGAACACCTTTGAGCCGCGTGCCTCTGTCTCCTGGACAGCTCTGCAGGCCTTTGGGTTCACGTGGCCGTTTCCCAAAGGCAGGCTGCGTGGGCCAATCAGTTCTCTTGCCACTCATTGGAGCTTTTCTGAGGTGCACTGTGCTAGCATCTGGGCCCCAGAGAGATCGGGCTAATGCTGTGGGCCACACCCTCCCTGGCTTGGCATTGGCCTCTGTGTGACTTTGCCTATTTCGGAAGAGCCCTGTTCCCTTGGGTCTTCCTCTGTGGCACAGGTTGGTAGGGCTTTCATGTGGCTGCCATCAAGTCTGGCATTTACTTATTTGGTGTGCCTTTTGAAGTATCCTGGAAGGTCTAGACCCCTCAGTTCTAGAGCCTAGATGTGGGAATGCTGGCTAAGTGCCTGCAGATGCCCTTGGGCGGTTATAGCCTTTTAGAAAGAGAAACACTCACAGGGCCACATAGAGGATGGGTATAGAGATGACCCCGCTGTCACCACATAACTCAGGGCAGCTTTGTGACTTCTGCCAACATCTGCTCCAGACAAAGCCTCGGGGTAGCAGTGCTGTGTGCCAGTCCTGTCAATGCCATGGAGTAGTGGCAGGTCTCAGCCCAGTCTTACTCCCTTCCAG
Seq C2 exon
AGAGGACCCTAATGCTGCCACTGACTGAGGGCTCACTGCGACTTCGAGCTGACGATGAGGACAGCCTGACCTCTGAAGACTCCTTTTTCTCAGCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.7=100)
A:
NA
C2:
PF102654=DUF2217=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGAAGGGAGTTTGCTGA
R:
TCAGTGGCTGAGAAAAAGGAGT
Band lengths:
210-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: