RnoINT0092531 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8942220-8943132:+
Coord C1 exon
chr3:8942220-8942337
Coord A exon
chr3:8942338-8943031
Coord C2 exon
chr3:8943032-8943132
Length
694 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCAGTCTTACTCCCTTTCAGAGA
3' ss Score
8.64
Exon sequences
Seq C1 exon
CCAGAGTCACAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGTTGCACCGGGCCTACCATTTGCAGGAAGAGTTCGGATCCACCCTCCCCTCTGACAACATGCTGCTGGACCTTG
Seq A exon
GTGAGCAGGGCTGAAGTGCCAGGAACAGAGGTCGGGGAATGTCCAGAGAACCAGGGCACGGTTCCCCAGTGTAGCAAGCAAATTGAAGTTTGAATAAATAGGGAAACTGAGGTTTTCCCTTAAAAATGGCAGGCAGACTGAAGCAAGATGAGGCCTGGAGTCCATAGTTAGTGTGCTTTGCCCCGGCCTCTTGGGAACACCTTTGGGCTCAGTGCCTACATCTCCTGGACAGTCCTGCAGGCCTTAGGGTTCCCATGGCAGTACCCAGAGGCAGGCCGCGTGGACCTCAGTTCTCTTGCCACTCGGTAGAAGTACAGAAGTGTGAGCCACCGAGAGGGAACTCACTTACTCGGTCTGTTGTCCAGTGTCCTCTTCACGCCTGCCACGTCTAGCCTTTCCCAGCGTGCACTGTGTGAACAAGTGGGGTCCAGAGAGGGCTGGCTAGTGCTACAGGCCATATCCTCCCTGGCTTCTTGGCATTGGCCTCAGTGTGACTTTGCCTACTGAGTATCCTGTTCCCTTGGGTCTTCCTCTACGACAGAGGTCGGTCGGTAGGGCCACCATTAAGTCTGTGGCATGCATTTATTGATTTACTTGACTCACCTTTCTGAAATGTCCTGGGATGTCCAGCTCCCTCAGCTCTAGAGCCTGCAGATGTCGGGGAGGGTCTCAGGCCAGTCTTACTCCCTTTCAG
Seq C2 exon
AGAGGACCCTAATGCTGCCCCTGACTGAGGGCTCATTGTGTCTGCGAGCTGATGATGAGGACAGCCTGACCTCAGAAGACTCCTTTTTCTCAGCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.8=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTCACAACGAAGGGAG
R:
TCAGTGGCTGAGAAAAAGGAGT
Band lengths:
218-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]