HsaINT0061443 @ hg19
Intron Retention
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131821433-131822929:+
Coord C1 exon
chr9:131821433-131821550
Coord A exon
chr9:131821551-131822828
Coord C2 exon
chr9:131822829-131822929
Length
1278 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCTCTCACTGCTCTTCCCAGAGA
3' ss Score
6.98
Exon sequences
Seq C1 exon
CCAGAGTCACAGCGGAAGGAGTTTGCAGAGAAGCTGGAGTCCCTGCTGCACCGTGCCTACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGCAGACAGCATGCTGCTAGACCTCG
Seq A exon
GTGAGCTGGGCCCAGTGCAGGTGGGGTGGGCGTGGAGGGTGGCAGGGATGGAGGTGAGGAGAAGTTGCGAGAACCGGGTCGTGGTTCTCTCAGTGCGTCCAATGAATCAGAATCCCCAGGGCTCTCCGACCTCGCGTGATCCAGCACCTTATGGCACAGATGGGGAAACTGAGGTGTTCCCTTCTCCATGGCAGGCTGGAGCAGAGCTGAGGTGAGGCCCAGAATCCCCAGCAAGTGCACCTGGCTCCATCCTCTTGGGTGCAGCCTTGGGGTTCGTGTGGCAGCATCTCCCTGATGGCTCTCCCAGGCCTTCGCTTCGAGTCCTTTCCTGTGGCTCAAACTGGGTGGGTGGATGGAGTGACTCACGGGAGGTTCACTCAGAGCAGGCCAAAGGCCAAGAACAGAAGTTCCTGTTGTTGGGTGCGCTGAGGTGAAATGATGTGACATACTGAGGGGGAACCAAGTTATTCTGCCAAACAGCCACTGTCCTCTTCGGACCCCTGCAGTGAATGACACCCTGGCCCCTCCCTGTGCACTCAACCCTGTGGGACCCTCAGACTCCTGAGGGTCCAGCTGCCTGGCTCTGCCAGTGGAGACACAGAACCGGAGTGGGTCGGCCGAGCCACGCACCCTGCCCTGGCTTCTCCCCACGTGCTCTGGGTGTGGTTTCTCTGTTGGAGGAATCTGCCTCCTCTGGCCTCCCTACATGGCAGAAAGGGCTGGGGGACCTTTAGGGTGGCCCGCCGCAGGTCTGTGGCCTTTGCTTATTTGCTCGACAATCCTTTCCTGAGCACCCTTGGAGGTCCACACCCCTCAGCCCTTGGGCGAGCACGGAGGGGAACTCCAGGTTAGTGGCTGTGGACTCTTTCGAGCCCTTGGTATCAATGGCTGAGTTTCAGCTTGTCAGAGGAGAGAGGCGATTTCCCCGGGGCCACACAGTTCAAGGTCCTCCCCCTGCAGAGCTTGGGCCTTCAGGCCTCAGGTCCAGCGGTGCAACCTGTGAGCCTGGCAGAGCCGCTCACCAGCCGAGGGCTCACACCTGAGGCTGACGACCTCCGAGGATGTCGTGGGTGTTGAAGGAGGTCACTCACTGAGGCGAGGAGTCCAGCGTCCTCACACAGAAGCGCTTGGCACGTCAGAGCTTTGCCATTGAGTGTGGGAATCACAGGCTCGGGATGAAGCCTCCCCTGGGCCTGATGGGGGACTTCGTGTACCGGGATTCCAGCTGAGCACTGTGTGGGGAGTCTCAGCCCCGCTTTCTCTCACTGCTCTTCCCAG
Seq C2 exon
AGAGGACCCTCATGCTGCCCCTGACCGAGGGCTCGCTGCGGCTGCGGGCGGACGATGAGGACAGCCTGACTTCAGAGGATTCCTTCTTCTCCGCCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-FAM73B:NM_032809:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(12.5=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCACAGCGGAAGGAGTT
R:
GGTGGCGGAGAAGAAGGAATC
Band lengths:
214-1492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)