GgaINT1015083 @ galGal4
Intron Retention
Gene
ENSGALG00000006643 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr1:7307937-7308220:+
Coord C1 exon
chr1:7307937-7308030
Coord A exon
chr1:7308031-7308129
Coord C2 exon
chr1:7308130-7308220
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
CTGCCTATGTTTATAAACAGAAA
3' ss Score
7
Exon sequences
Seq C1 exon
GTAGTTGAGAAGAATGGAAAGCTTCAATATGAGATAGATAATAAACTTATTAGCCCAGAAGATGTGGCAAAGCTAATTTTCAGTAAAATGAAAG
Seq A exon
GTATATAATAAATGTTTTTAAGCTGTCCTCACAGTTTTAAGATATGATATGTTGGTGTTTTGCTTTTAATCAACATGTTCTGCCTATGTTTATAAACAG
Seq C2 exon
AAACTGCTCAGTCTGCATTGGGTTCAGATGTAAATGACGTTGTTATCACTGTACCATTTGATTTTGGAGAGAATCAGAAAAATGCCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006643:ENSGALT00000010732:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.2=100)
A:
NA
C2:
PF0001215=HSP70=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAGAAGAATGGAAAGCTTCA
R:
AGGGCATTTTTCTGATTCTCTCCA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]