HsaINT0077901 @ hg38
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock protein family A (Hsp70) member 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr10:14848790-14849811:+
Coord C1 exon
chr10:14848790-14848895
Coord A exon
chr10:14848896-14849720
Coord C2 exon
chr10:14849721-14849811
Length
825 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTATATTTTTTAATATGCAGAAA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTCATTGAAAAAAATGGGAAATTACGATATGAAATAGATACTGGAGAAGAAACAAAATTTGTTAACCCAGAAGATGTTGCCAGACTGATATTTAGTAAAATGAAAG
Seq A exon
GTATTTAGCAAAAGATATATAATAGTTACCTTTAATGATCTTTTGAAAGTTGACCTTAAAAAAAAAGTTAGAGGTATTTTTAGATCTTGGGAGAAGCAGAGTGATTGCACAGATAAGTAAGGACATATAAACTGTCGACCTGGTTGGGGCACTAACTGGGTATGTGCCCGTGGTTAAATGACTTGCCTTACCTGACTGTGATTTCCCTATAAGTCATATAAATGAATTAGGCCAAATAAGAGTTTTCCAAACATAGTTAGTGGCCGAGTAAGCTTGGTGAATAGTGGCACTTCAAGATCGACAGTATACTGTGAACAATAATTTAGGCAGACTAAGTAGGTCTGATTTTATCAGCAGTTCAGACGGAGGCTCTGAGCTGAGTGGTATTCTGTCGAACAATTTGGGAAATTCTGGAATAGATTGTTTATAAGGCTTCCTTCAGCCCTGTAATGATGTTAAGAACTTGGGGGTTGGAAGGCAGGCTTTAAATGTAGAGAACTAACATTATGACGTTGTGTCTTCACATGGATGCGTTAGGAGCTTATTCTCCATGGAGTCAGTCTAATTCAGAAGATGGTTGATACTGAAGCCTAAGAGCCAGGCTGTTTGGAAAGCTAATTCTGTGTCCAAATATATCACCAAAACCACAAGAAGTGCTGCATGATTTCAGAGCGCAGAGAAGAAAATTGACACGGGGGCGGGGTGGGCAAGCAAGTGTATTGGGAAATATGTTAAGTGAGATCTTTGTCATAAATTAATAAACCTCAGAAAGTATCACTTGTCATTTTCTTCTGTCATCAGAATTTTATATTTTTTAATATGCAG
Seq C2 exon
AAACGGCACATTCTGTATTGGGCTCAGATGCAAATGATGTAGTTATTACTGTCCCGTTTGATTTTGGAGAAAAGCAAAAAAATGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522:ENST00000378372:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.5=100)
A:
NA
C2:
PF0001215=HSP70=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development