MmuINT0079337 @ mm9
Intron Retention
Gene
ENSMUSG00000079615 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3418320-3419871:-
Coord C1 exon
chr2:3419766-3419871
Coord A exon
chr2:3418411-3419765
Coord C2 exon
chr2:3418320-3418410
Length
1355 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTTTGCTCTTGAATGTACAGAAA
3' ss Score
5.77
Exon sequences
Seq C1 exon
GTCATTGAGAAAAATGGGAAGTTGCGGTATGAAATAGATACAGGAGAAGAAACAAAACTTGTTAATCCAGAAGATGTTGCCAGACTGATATTCAGTAAAATGAAAG
Seq A exon
GTACTGCACAGAAGTTAATAACTTACTTTATTTTGTTTTGCAATTTCTTAAAAATATTTATTATTTATTTACATGTACCTGTGTATGTGTCTGTATCTGTGCATTGCCTGAGGTTAGAAACATCCCCTGAAACTGGAATTAGAAGCAGTTGTGAGCTGCTTGAGGTGGGTGCTGGGAATTGAACTCAGGTCCTCTGGGAAACCAGTGCATGTCCTTAACCACTGAGCCACCTCTCCAACACCTGACTGATAACTTTAAATGATCCCTTAAAAGAGTGGGGACAGCAGTTCCCAGTGCTGAGGAGCTGGAGACAGATGTATGCTTGGGGCCTGCTGGCTGCCCATTTTGGCCTACTTGAGTTACACACACACACACATACACACACACACAAAGATTTGAGGAGAAACAATGAGCGATTCCACGAGTTAGCAGTTAGACTTTGCTTGGGTCTGACCTTAACCTTCCCTGTAAGGACAGGTCATGCCTGAAATGCCTGGGATCAGGGCTATATACAATTTCAGGGTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTAATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGTATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTAAGCTATCTTACCAGCCCCCCTCAGTTTTGTTTTAAACTTGGGGATATTTACCTAGAGTCTGCCAGTTAAGAGTCCTAATTCCCAGGTGGTGGCTCATGTGGGAGTTCGAGACCAGCCTGGTCTATACCGTAAGTTCTAGGACAGCCAGGGCTACTCAGAGAAACACTTTTTTTTTTGTTTTTGTTTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCGTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAACTCTGCCTGCCTCTGCCTCCCGAGGAATCTTGAGAGGCAAGGTAGTCCTTACAAAGGGTCTCGTCTCATAAATGAATTTGGAACTAGTTCTCTGGACCCAGTCTCATGTAGATTTTTGATAGCCCAAAGCTGAAGAGCCAAGCTCTTGGACAGTACCTGGCCCGTGTCCATCATCCATCATGAGACCCACAGGAATCACTGAATAACCCAAGGGCCACAGGAGGGAGTGGAGGGGCGGCAGAACCTGGACCTCTGGTGAGAAAATCTCAGGCTTAGGAAGCTAGGAAGAGCTTTATTGCTTAGCATGTGTCATCACGATACATGTATTTGTGTTTGCTCTTGAATGTACAG
Seq C2 exon
AAACAGCGCATTCTGTCCTGGGCTCAGATGCAAATGACGTGGTTGTCACTGTCCCATTTGACTTTGGAGAAAAGCAGAAGTCTGCTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079615-Hspa14:NM_015765:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGAGAAAAATGGGAAGTTGC
R:
CAGACTTCTGCTTTTCTCCAAAGT
Band lengths:
190-1545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: