RnoINT0072128 @ rn6
Intron Retention
Gene
ENSRNOG00000015212 | Hspa14
Description
heat shock protein family A, member 14 [Source:RGD Symbol;Acc:1303296]
Coordinates
chr17:78745037-78746514:+
Coord C1 exon
chr17:78745037-78745142
Coord A exon
chr17:78745143-78746423
Coord C2 exon
chr17:78746424-78746514
Length
1281 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TGTTTCTTTTACCTGCACAGAAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTCATTGAGAAAAATGGGAAGTTGCAGTATGAAATAGATACAGGAGAAGAAACAAAACTCGTTAGTCCAGAAGATGTTGCCAGACTGATATTCAGTAAAATGAAAG
Seq A exon
GTACTGCAAAAGTTAATAACTTACTTTAGTTTGCAACTTCTTTAAACATATTTGTATTATTTATTTACATGTGCGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGTCTGTATATGTGCATGTAAGAGAGAGAGAGAGAGAGAGTCTGTATATGTGCATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTGTATATGTGCATGTAAGAGAGAGAGAGAGAGAGAGTCTGTATATGTGCATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTGTATATGTGCATGTGCCTGAGATTAGAAACGTCCCCTGAAGCTGGAATTAGAAGCAATTGTGAGCTACTTGATGTGGGTGCTGGGAATTGAACTCATGTCCTCTGAGAGAACAATACATGTTCTTAACCACTGAGCCACCTCTCCGGCCCCTGTTAACTTTTAAATGATCACTTAAAAAAGTGGGGACAGTGTTTCCCAGTGGGGAGGAGTTGGAGACAGACGTATGCTTGGGGCCTGTGGCTGGCCATTTCAGCCTACTGTGAGTCGTAGGCACGCGCACACGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGATTTGAGGAGAAACAGCGAGTCCACAAATTAGCAGTTAGATCTAAACCAGCCTTTGCTTGGGTCTGACCTTAATCTTCCCTGTAAGGACGGGTCATACCTGAAATTAGAACCAGAGTTACATAAAATTTCAGATTCTTTTAAACAGAGTCTGCCAGTTAAGAATCCCTAATTCCTGGATGGTGGCTCATGTGGGAGGCAGAGGCAAGCGATCATCTATGTGAGTTTGAAACCAGCCAGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGATACTTAGAGAAACACTGTTGAACAAAAGGACTCTTGGAGGCGAGGCAGTCCTTACGTGGGGTCTCTTCACATTAATGCATTCGGAACTAGTTCCCTGGGCGCAGAATGATGTAGATTTTTGACAGTCCAAAGCTGAAGCGCCACACTCTTGGAAAGGACCTGGTTCTGTGTCCACAATCCGTCACGAGAACCACAGGAAGCACAGTGGGATGACCTAAGCCACAGGAGGGAGTGGACAGGGTGGGCAGGCCCGGGATCTCTGCTTGGCGACTTGGGCTTCCATTAGGAAACTGCATTAGGCAAGTGTCCTTGCCTAGCGTGTGCCACCACAGTGTATTTATTTGTGTTTCTTTTACCTGCACAG
Seq C2 exon
AAACAGCACATTCTGTCCTGGGCTCAGATGCAAACGATGTCGTTGTTACCGTCCCATTTGACTTCGGAGAAAAGCAGAAGTCTGCTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015212:ENSRNOT00000020854:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.9=100)
A:
NA
C2:
PF0001215=HSP70=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGAGAAAAATGGGAAGTTGCA
R:
CAGACTTCTGCTTTTCTCCGA
Band lengths:
190-1471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]