HsaINT0077901 @ hg19
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14890789-14891810:+
Coord C1 exon
chr10:14890789-14890894
Coord A exon
chr10:14890895-14891719
Coord C2 exon
chr10:14891720-14891810
Length
825 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTATATTTTTTAATATGCAGAAA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTCATTGAAAAAAATGGGAAATTACGATATGAAATAGATACTGGAGAAGAAACAAAATTTGTTAACCCAGAAGATGTTGCCAGACTGATATTTAGTAAAATGAAAG
Seq A exon
GTATTTAGCAAAAGATATATAATAGTTACCTTTAATGATCTTTTGAAAGTTGACCTTAAAAAAAAAGTTAGAGGTATTTTTAGATCTTGGGAGAAGCAGAGTGATTGCACAGATAAGTAAGGACATATAAACTGTCGACCTGGTTGGGGCACTAACTGGGTATGTGCCCGTGGTTAAATGACTTGCCTTACCTGACTGTGATTTCCCTATAAGTCATATAAATGAATTAGGCCAAATAAGAGTTTTCCAAACATAGTTAGTGGCCGAGTAAGCTTGGTGAATAGTGGCACTTCAAGATCGACAGTATACTGTGAACAATAATTTAGGCAGACTAAGTAGGTCTGATTTTATCAGCAGTTCAGACGGAGGCTCTGAGCTGAGTGGTATTCTGTCGAACAATTTGGGAAATTCTGGAATAGATTGTTTATAAGGCTTCCTTCAGCCCTGTAATGATGTTAAGAACTTGGGGGTTGGAAGGCAGGCTTTAAATGTAGAGAACTAACATTATGACGTTGTGTCTTCACATGGATGCGTTAGGAGCTTATTCTCCATGGAGTCAGTCTAATTCAGAAGATGGTTGATACTGAAGCCTAAGAGCCAGGCTGTTTGGAAAGCTAATTCTGTGTCCAAATATATCACCAAAACCACAAGAAGTGCTGCATGATTTCAGAGCGCAGAGAAGAAAATTGACACGGGGGCGGGGTGGGCAAGCAAGTGTATTGGGAAATATGTTAAGTGAGATCTTTGTCATAAATTAATAAACCTCAGAAAGTATCACTTGTCATTTTCTTCTGTCATCAGAATTTTATATTTTTTAATATGCAG
Seq C2 exon
AAACGGCACATTCTGTATTGGGCTCAGATGCAAATGATGTAGTTATTACTGTCCCGTTTGATTTTGGAGAAAAGCAAAAAAATGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522-HSPA14:NM_016299:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(28.7=100),PF0348410=B5=PD(46.9=83.3)
A:
NA
C2:
PF0001215=HSP70=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)