GgaINT1018542 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7569986-7570422:-
Coord C1 exon
chr14:7570278-7570422
Coord A exon
chr14:7570193-7570277
Coord C2 exon
chr14:7569986-7570192
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAT
5' ss Score
6.15
3' ss Seq
TCTTTCTTCAATGTTTGTAGGCT
3' ss Score
7.78
Exon sequences
Seq C1 exon
AGCAAAGCGTGAACAAGAGGTCACTGTGCTGAAGAGAGCTTTGGAGGAGGAGACCCGAACTCATGAAGCCCAAGTCCAGGAGATGAGACAAAAGCACACTCAAGCTGTGGAAGAACTAACAGAGCAGCTAGAACAATTTAAACGG
Seq A exon
GTAAATAGCAATCCATCCTACTGATAACCACACACTAAGTAATATGAATTCCTTTTACAGAAAACTCTTTCTTCAATGTTTGTAG
Seq C2 exon
GCTAAAGCAAACTTGGATAAGACCAAACAGACACTGGAGAAAGATAATGCTGATCTGGCTAATGAAATCAGGAGCCTGAGTCAGGCCAAACAAGACGTAGAGCACAAAAAGAAGAAGCTGGAAGTACAGCTGCAAGATTTACAGTCTAAATACAGTGATGGAGAGCGTGTTCGGACAGAACTCAATGAAAAAGTTCACAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=NA C2=0.710
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(20.2=100),PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0003816=Filament=PD(21.8=75.4),PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAGCCCAAGTCCAGGA
R:
ACGTCTTGTTTGGCCTGACTC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]