RnoINT0096361 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:841768-843557:+
Coord C1 exon
chr10:841768-841912
Coord A exon
chr10:841913-843350
Coord C2 exon
chr10:843351-843557
Length
1438 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
CCCTCTGCTTCCCTTGACAGGCC
3' ss Score
12.06
Exon sequences
Seq C1 exon
AGCCAAGAGGGAACAGGAAGTGACAATGCTGAAGAAGGCCCTGGATGAAGAGACGCGATCCCATGAGGCCCAGGTCCAGGAGATGAGGCAGAAGCACACACAGGCAGTGGAGGAACTCACAGAGCAGCTGGAACAGTTCAAAAGG
Seq A exon
GTGCGTGTTTAGAAGACACCCCAGAAACCATGTCATGATGGCAGACTTCACCCATTCTTGTTTAGAATTTTGGAATTTGAAATGCTCCAAAAAACTAGAACTTTCTGTGTGTTACAAGTAAAAATTCCTACCCCAGCCTTCATGAGATGGGTCATTGTTGGAATGCGAGTACACCAAGTTAATTGATAAAATGATCTTCAGGCCATGCAGTGTCTATGAAAAGTAGGCAAATCATGTTCAGTCTGAGTCCTGGGTCCTATTCCCCAGATGCTTCTTTGCATACAAATACAAATATCCTACAACTCAAAAACCTGTGAGACTCATGATTCTCAGATTTAGAAAAACTGTATAGCCCAGCTATGTTGTGTGTGGCTGTGTGTGGGGTCATCTGGAAGCAGGGGAATGTGTGTGGGAGGGTGATCTGGAAGCAGGTGGTTTGCCTGGGCTCCAGGAGCCGCATGGTTTTCTCGTCTTCTATCCTCCTCACTAACTCAAGTCCATCTCTTTTTCCTGTTTTTATCTGAACACTTTTTCCTTAGGTGACTCATATATGTACAGGAGCTGGTTAAGTAAAATAATGTGATTACAGAAATAGCAGGGCAAATTAGACAATGATGCAAGAGATAAGAGGAAGTGATGGTAATCAGACCCTTTCAAAGGGAGTGGAGTTATTGCACAAACAGCAGTCACTGCCTAGATCTGCCTGGTTTCTACCTTGGGGGAAGGTAAAACTTCTGTCTCCAGGTCTTTAGCTTGTCCTTTGAAAGTCAGAATTATTGAAATACGTAAACAGCACACACACACACACACACACACACACACACACACACACACACACGCACATTTCTTATTTTTAGACAGAGTCTCATTCTATAACCTAGGTTGTCTTGGAACTCATAATAATCCTCCTGCTTCAGCTGGCATGCTGGGATTATAGACAGAAGTCATCACAGCCTGCCTCCCTTTTTCTCTTTCCATTTGTTTCTTTCCAGCTCCCTCTCTTCCCTCCTTCCTCTTTCTTCTTTGAGACATGATTTCATGATACCTCACGCCTCACATTCAGGATTCCACTACTGAGTGCTGGGATTAGAGGTGTATGTCACCATACCTGGCTAAATTCGCCAACTTTAAGTGTACCTTTCAATGCATTTTGACAAATGTGGCAAATGAGCAGAGTGCTACAGACACAGGATAGAACATGAAGTTGCTTTAAAAAGATCTGGGAATTCAGATTTTTTCCTGGGAAATGACCTAAAATTTGGTAACCTGTACAGAATAGGCCTCAAGGACGTGGGTATGTTTGGATTTCATTCCTATAGTTAGAAAACTAGAATTTCAAGAGTCCTGCAGAAGTTCTATGCGCCCCTCCTCTCTTCCTTGGACTGGAAGCAGAGCAGGGAGAGGAGACAAGCCCACCTCCCTCTGCTTCCCTTGACAG
Seq C2 exon
GCCAAGGCAAACCTGGATAAAAGCAAGCAGACGCTGGAGAAGGAGAACGCAGACCTGGCTGGGGAGCTGCGTGTCCTGGGCCAGGCAAAGCAGGAGGTAGAGCACAAGAAGAAGAAGCTGGAGGGGCAGCTGCAGGAGCTGCAGTCCAAGTGCAGTGATGGGGAGCGTGCCCGGACTGAGCTCAGTGACAAGGTCCACAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100),PF045827=Reo_sigmaC=PU(18.0=51.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100),PF045827=Reo_sigmaC=FE(48.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGAGGGAACAGGAAGT
R:
TGGACCTTGTCACTGAGCTCA
Band lengths:
342-1780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]