GgaINT1018680 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4046630-4047178:+
Coord C1 exon
chr2:4046630-4046784
Coord A exon
chr2:4046785-4046886
Coord C2 exon
chr2:4046887-4047178
Length
102 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CTGAAGCTGTGTCCTTGCAGGAC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTGACGGGGCTGAGTGTGACGAGCTGCCGGGCGCAGCTGGTGGTCTTCCACACGCAGAACCACGATGACCTGGCCGTCTGCCTGCACAAGACACAGCCGCGGGGAGACGAGCGGGTGGGCGAGCTGGTGGGCGTCCTGCTGGAGCACTGCCGAAC
Seq A exon
GTGAGTGGGGCTGAGTCCTACCAACCCCAAGGGACACCCAGCGGGGGGCAGCACAGCCCCCCAGGGTGACCACAGCCCTGTGCTGAAGCTGTGTCCTTGCAG
Seq C2 exon
GACCAAGCGGGAGCTGCAGGTCCATGTCTCCGACCGCATCCAGCTGAGCCTGCGGGGGCGCAAGAGGTTGCTGACCGTGGAAACTCAGCCCGACGTGGCTGCCCCTGATTTCCGCAAGAGTCGTGATGGTTTTGTGCTCTACTGGCCTGGGAGCTGAGGGGGTGGACGCCGTGTCCCCCACCGCTGCCACCGGTGCTGTGGTGACAGGGCACAGCTGTGTCCTGCATCCCTGCCCCATGCCCTGCATCCCCCCCAGCCCTGCATCCCCCCCATCCCACCTCCCCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(25.0=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCACACGCAGAACCAC
R:
CCATCACGACTCTTGCGGAAA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]